RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 MT-ND3P03897 115 aa13.73□□□□□ -0.21
PRPF39-204ENST00000553605 ANKRD34CP0C6C1 535 aa13.73□□□□□ -0.21
PRPF39-204ENST00000553605 SERPINA4P29622 427 aa13.73□□□□□ -0.21
PRPF39-204ENST00000553605 POLR2LP62875 67 aaKnown RBP13.73□□□□□ -0.21
PRPF39-204ENST00000553605 ATP11AP98196 1134 aa13.73□□□□□ -0.21
PRPF39-204ENST00000553605 PTK2Q05397 1052 aa13.73□□□□□ -0.21
PRPF39-204ENST00000553605 IL11RAQ14626 422 aa13.73□□□□□ -0.21
PRPF39-204ENST00000553605 HPS6Q86YV9 775 aa13.73□□□□□ -0.21
PRPF39-204ENST00000553605 PLXDC1Q8IUK5 500 aa13.73□□□□□ -0.21
PRPF39-204ENST00000553605 RHOT1Q8IXI2 618 aa13.73□□□□□ -0.21
PRPF39-204ENST00000553605 PAF1Q8N7H5 531 aa13.73□□□□□ -0.21
PRPF39-204ENST00000553605 RBMXL3Q8N7X1 1067 aaKnown RBP13.73□□□□□ -0.21
PRPF39-204ENST00000553605 SH3KBP1Q96B97 665 aa13.73□□□□□ -0.21
PRPF39-204ENST00000553605 FAM81BQ96LP2 452 aa13.73□□□□□ -0.21
PRPF39-204ENST00000553605 COQ10AQ96MF6 247 aa13.73□□□□□ -0.21
PRPF39-204ENST00000553605 OR2M4Q96R27 311 aa13.73□□□□□ -0.21
PRPF39-204ENST00000553605 RANBP9Q96S59 729 aa13.73□□□□□ -0.21
PRPF39-204ENST00000553605 STN1Q9H668 368 aaKnown RBP13.73□□□□□ -0.21
PRPF39-204ENST00000553605 ATP13A3Q9H7F0 1226 aa13.73□□□□□ -0.21
PRPF39-204ENST00000553605 SARS2Q9NP81 518 aaKnown RBP13.73□□□□□ -0.21
PRPF39-204ENST00000553605 LNPEPQ9UIQ6 1025 aa13.73□□□□□ -0.21
PRPF39-204ENST00000553605 AKAP9Q99996 3911 aa13.72□□□□□ -0.21
PRPF39-204ENST00000553605 GOLGA6L3A6NEY3 463 aa13.72□□□□□ -0.21
PRPF39-204ENST00000553605 SPAG6O75602 509 aa13.72□□□□□ -0.21
PRPF39-204ENST00000553605 ZNF202O95125 648 aa13.72□□□□□ -0.21
PRPF39-204ENST00000553605 EML2O95834 649 aa13.72□□□□□ -0.21
PRPF39-204ENST00000553605 PLEKP08567 350 aaPredicted RBP13.72□□□□□ -0.21
PRPF39-204ENST00000553605 GABRB2P47870 512 aa13.72□□□□□ -0.21
PRPF39-204ENST00000553605 EPHA4P54764 986 aa13.72□□□□□ -0.21
PRPF39-204ENST00000553605 YBEYP58557 167 aaPredicted RBP13.72□□□□□ -0.21
PRPF39-204ENST00000553605 SH3BP2P78314 561 aa13.72□□□□□ -0.21
PRPF39-204ENST00000553605 PNOCQ13519 176 aa13.72□□□□□ -0.21
PRPF39-204ENST00000553605 RAB6CQ53S08 254 aa13.72□□□□□ -0.21
PRPF39-204ENST00000553605 DOK6Q6PKX4 331 aa13.72□□□□□ -0.21
PRPF39-204ENST00000553605 XYLT1Q86Y38 959 aa13.72□□□□□ -0.21
PRPF39-204ENST00000553605 IQCKQ8N0W5 287 aa13.72□□□□□ -0.21
PRPF39-204ENST00000553605 CISD2Q8N5K1 135 aaKnown RBP13.72□□□□□ -0.21
PRPF39-204ENST00000553605 ECHDC3Q96DC8 303 aa13.72□□□□□ -0.21
PRPF39-204ENST00000553605 SCARF2Q96GP6 870 aaPredicted RBP13.72□□□□□ -0.21
PRPF39-204ENST00000553605 C9orf72Q96LT7 481 aa13.72□□□□□ -0.21
PRPF39-204ENST00000553605 RAB6CQ9H0N0 254 aa13.72□□□□□ -0.21
PRPF39-204ENST00000553605 KCTD5Q9NXV2 234 aa13.72□□□□□ -0.21
PRPF39-204ENST00000553605 UBA2Q9UBT2 640 aaPredicted RBP13.72□□□□□ -0.21
PRPF39-204ENST00000553605 TMEM59LQ9UK28 342 aa13.72□□□□□ -0.21
PRPF39-204ENST00000553605 ITGB1BP2Q9UKP3 347 aa13.72□□□□□ -0.21
PRPF39-204ENST00000553605 HEATR9A2RTY3 570 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 GOLGA6CA6NDK9 693 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 GOLGA6BA6NDN3 693 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 RASA4BC9J798 803 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 GOLGA8SH3BPF8 625 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 RASA4O43374 803 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 CEACAM4O75871 244 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 GOLGA6DP0CG33 693 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 ITGA1P56199 1179 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 BCL2L1Q07817 233 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 PYCR3Q53H96 274 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 SRLQ86TD4 932 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 SYVN1Q86TM6 617 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 TRIM59Q8IWR1 403 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 RTL3Q8N8U3 475 aaKnown RBP13.71□□□□□ -0.21
PRPF39-204ENST00000553605 TMEM35BQ8NCS4 154 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 FDCSPQ8NFU4 85 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 SHC3Q92529 594 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 POM121Q96HA1 1249 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 CCDC34Q96HJ3 373 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 SPATA32Q96LK8 384 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 RUFY1Q96T51 708 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 GPR87Q9BY21 358 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.71□□□□□ -0.21
PRPF39-204ENST00000553605 BRD8Q9H0E9 1235 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 EPB41L1Q9H4G0 881 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 GOLGA6AQ9NYA3 693 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 B4GALT6Q9UBX8 382 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 G3BP2Q9UN86 482 aaKnown RBP13.71□□□□□ -0.21
PRPF39-204ENST00000553605 TMEM98Q9Y2Y6 226 aa13.71□□□□□ -0.21
PRPF39-204ENST00000553605 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.71□□□□□ -0.21
PRPF39-204ENST00000553605 CROCCQ5TZA2 2017 aa13.71□□□□□ -0.22
PRPF39-204ENST00000553605 MN1Q10571 1320 aaPredicted RBP13.7□□□□□ -0.22
PRPF39-204ENST00000553605 FAM170AA1A519 330 aa13.7□□□□□ -0.22
PRPF39-204ENST00000553605 K7ELQ4 463 aaPredicted RBP13.7□□□□□ -0.22
PRPF39-204ENST00000553605 PSMA7O14818 248 aa13.7□□□□□ -0.22
PRPF39-204ENST00000553605 FGF5P12034 268 aa13.7□□□□□ -0.22
PRPF39-204ENST00000553605 PTPN4P29074 926 aa13.7□□□□□ -0.22
PRPF39-204ENST00000553605 RGRP47804 291 aa13.7□□□□□ -0.22
PRPF39-204ENST00000553605 CSNK1DP48730 415 aa13.7□□□□□ -0.22
PRPF39-204ENST00000553605 SEPHS1P49903 392 aa13.7□□□□□ -0.22
PRPF39-204ENST00000553605 GFERP55789 205 aa13.7□□□□□ -0.22
PRPF39-204ENST00000553605 RPS18P62269 152 aaKnown RBP13.7□□□□□ -0.22
PRPF39-204ENST00000553605 RPS15P62841 145 aaKnown RBP13.7□□□□□ -0.22
PRPF39-204ENST00000553605 CDK18Q07002 472 aa13.7□□□□□ -0.22
PRPF39-204ENST00000553605 LRP8Q14114 963 aa13.7□□□□□ -0.22
PRPF39-204ENST00000553605 ZRSR2Q15696 482 aaKnown RBP13.7□□□□□ -0.22
PRPF39-204ENST00000553605 CDO1Q16878 200 aa13.7□□□□□ -0.22
PRPF39-204ENST00000553605 PARP15Q460N3 678 aa13.7□□□□□ -0.22
PRPF39-204ENST00000553605 PLEKHN1Q494U1 663 aaPredicted RBP13.7□□□□□ -0.22
PRPF39-204ENST00000553605 DENND2CQ68D51 928 aa13.7□□□□□ -0.22
PRPF39-204ENST00000553605 RAET1GQ6H3X3 334 aa13.7□□□□□ -0.22
PRPF39-204ENST00000553605 IYDQ6PHW0 289 aa13.7□□□□□ -0.22
PRPF39-204ENST00000553605 SLC9B2Q86UD5 537 aa13.7□□□□□ -0.22
PRPF39-204ENST00000553605 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms