RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 EPB41L5Q9HCM4 733 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 GOLGA6AQ9NYA3 693 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 TAAR2Q9P1P5 351 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 ACSL6Q9UKU0 697 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 SSUH2Q9Y2M2 353 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 PTPRQQ9UMZ3 2332 aa10.85□□□□□ -0.67
VTI1BP3-201ENST00000550220 A0A1W2PQM1 296 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 NVLO15381 856 aaKnown RBP10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 MTA2O94776 668 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 CPNE6O95741 557 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 FGF1P05230 155 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 PDHA1P08559 390 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 JMJD7P0C870 316 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 CTPS1P17812 591 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 GJC1P36383 396 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 STC1P52823 247 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 PDX1P52945 283 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 VAC14Q08AM6 782 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 C19orf57Q0VDD7 668 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 PDK1Q15118 436 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 TCEA2Q15560 299 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 ATP13A4Q4VNC1 1196 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 TMEM164Q5U3C3 297 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 PIM3Q86V86 326 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 CNGA4Q8IV77 575 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 VSTM4Q8IW00 320 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 PQLC3Q8N755 202 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 SLC35G2Q8TBE7 412 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 ARRDC2Q8TBH0 407 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 CRELD1Q96HD1 420 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 NAF1Q96HR8 494 aaKnown RBP10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 RNF157Q96PX1 679 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 SRPK1Q96SB4 655 aaKnown RBP10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 ABCG8Q9H221 673 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 RMI1Q9H9A7 625 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 PCDH9Q9HC56 1237 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 RAD18Q9NS91 495 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 SPATS2LQ9NUQ6 558 aaKnown RBP10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 PKD2L2Q9NZM6 624 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 SEPT10Q9P0V9 454 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 RABGEF1Q9UJ41 708 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 INTUQ9ULD6 942 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 SUFUQ9UMX1 484 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 TTLL3Q9Y4R7 772 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 RNF215Q9Y6U7 377 aa10.84□□□□□ -0.67
VTI1BP3-201ENST00000550220 A0A1W2PNU3 283 aaPredicted RBP10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 LRRD1A4D1F6 860 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 ANKRD66B4E2M5 251 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 APOL1O14791 398 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 PPP1R12AO14974 1030 aaPredicted RBP10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 CD82P27701 267 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 UGT1A5P35504 534 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 ADCY8P40145 1251 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 TAS2R40P59535 323 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 IFI35P80217 286 aaPredicted RBP10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 B4GALNT1Q00973 533 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 CTBSQ01459 385 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 DSC2Q02487 901 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 GBE1Q04446 702 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 PPIDQ08752 370 aaKnown RBP10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 SQSTM1Q13501 440 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 TRA2AQ13595 282 aaKnown RBP eCLIP10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 MESDQ14696 234 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 NR1D2Q14995 579 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 TCEAL1Q15170 157 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 KCTD16Q68DU8 428 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 ZNF438Q7Z4V0 828 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 TSPAN33Q86UF1 283 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 NRROSQ86YC3 692 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 GALNT13Q8IUC8 556 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 PELI3Q8N2H9 469 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 CCL4L1Q8NHW4 92 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 RAPGEF5Q92565 580 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 BBC3Q96PG8 261 aaPredicted RBP10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 OR2M4Q96R27 311 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 MLPHQ9BV36 600 aaPredicted RBP10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 FAM83DQ9H4H8 585 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 NHEJ1Q9H9Q4 299 aaPredicted RBP10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 ABHD10Q9NUJ1 306 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 DDX56Q9NY93 547 aaKnown RBP10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 DTLQ9NZJ0 730 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 VPS18Q9P253 973 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 CHKBQ9Y259 395 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 LOXL2Q9Y4K0 774 aa10.83□□□□□ -0.68
VTI1BP3-201ENST00000550220 MYLKQ15746 1914 aa10.82□□□□□ -0.68
VTI1BP3-201ENST00000550220 RP1P56715 2156 aa10.82□□□□□ -0.68
VTI1BP3-201ENST00000550220 ITPR1Q14643 2758 aa10.82□□□□□ -0.68
VTI1BP3-201ENST00000550220 HGSO14964 777 aaPredicted RBP10.82□□□□□ -0.68
VTI1BP3-201ENST00000550220 MFAP3LO75121 409 aa10.82□□□□□ -0.68
VTI1BP3-201ENST00000550220 ECEL1O95672 775 aa10.82□□□□□ -0.68
VTI1BP3-201ENST00000550220 PRLP01236 227 aa10.82□□□□□ -0.68
VTI1BP3-201ENST00000550220 JCHAINP01591 159 aa10.82□□□□□ -0.68
VTI1BP3-201ENST00000550220 FUCA1P04066 466 aa10.82□□□□□ -0.68
VTI1BP3-201ENST00000550220 HLA-DQB2P05538 268 aa10.82□□□□□ -0.68
VTI1BP3-201ENST00000550220 SLC2A4P14672 509 aa10.82□□□□□ -0.68
VTI1BP3-201ENST00000550220 ALDH4A1P30038 563 aa10.82□□□□□ -0.68
VTI1BP3-201ENST00000550220 SLC5A2P31639 672 aa10.82□□□□□ -0.68
VTI1BP3-201ENST00000550220 NR2C2P49116 596 aa10.82□□□□□ -0.68
VTI1BP3-201ENST00000550220 GPLD1P80108 840 aa10.82□□□□□ -0.68
VTI1BP3-201ENST00000550220 SLC14A2Q15849 920 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms