RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 PHGDHO43175 533 aaKnown RBP13.4□□□□□ -0.26
PTCH1-215ENST00000547672 BUD23O43709 281 aaKnown RBP13.4□□□□□ -0.26
PTCH1-215ENST00000547672 HNRNPCL1O60812 293 aaKnown RBP13.4□□□□□ -0.26
PTCH1-215ENST00000547672 SMIM24O75264 130 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 TULP3O75386 442 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 CCDC166P0CW27 439 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 TPBGLP0DKB5 382 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 PKMP14618 531 aaKnown RBP13.4□□□□□ -0.26
PTCH1-215ENST00000547672 CTPS1P17812 591 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 SPAM1P38567 509 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 VIPR2P41587 438 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 STK19P49842 368 aaPredicted RBP13.4□□□□□ -0.26
PTCH1-215ENST00000547672 RASSF2P50749 326 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 ABCE1P61221 599 aaKnown RBP13.4□□□□□ -0.26
PTCH1-215ENST00000547672 IRX4P78413 519 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 OCRLQ01968 901 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 FCHO2Q0JRZ9 810 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 HYAL1Q12794 435 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 ITGA9Q13797 1035 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 PCLAFQ15004 111 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 TCEAL5Q5H9L2 206 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 FOXR1Q6PIV2 292 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 LYSMD3Q7Z3D4 306 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 RAB44Q7Z6P3 723 aaPredicted RBP13.4□□□□□ -0.26
PTCH1-215ENST00000547672 C10orf107Q8IVU9 208 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 CEP97Q8IW35 865 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 SUGP1Q8IWZ8 645 aaKnown RBP13.4□□□□□ -0.26
PTCH1-215ENST00000547672 ETFBKMTQ8IXQ9 262 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 RBFAQ8N0V3 343 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 FSTL5Q8N475 847 aaPredicted RBP13.4□□□□□ -0.26
PTCH1-215ENST00000547672 OR2A12Q8NGT7 310 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 RHEBL1Q8TAI7 183 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 RIN3Q8TB24 985 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 HEXDCQ8WVB3 486 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 KCTD4Q8WVF5 259 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 NSMCE3Q96MG7 304 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 PLEKHG4BQ96PX9 1271 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 ASB2Q96Q27 587 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 MCCC1Q96RQ3 725 aaPredicted RBP13.4□□□□□ -0.26
PTCH1-215ENST00000547672 CLPBQ9H078 707 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 ILKAPQ9H0C8 392 aaPredicted RBP13.4□□□□□ -0.26
PTCH1-215ENST00000547672 EML4Q9HC35 981 aaKnown RBP13.4□□□□□ -0.26
PTCH1-215ENST00000547672 PKD2L2Q9NZM6 624 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 NCKIPSDQ9NZQ3 722 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 MARCH4Q9P2E8 410 aaPredicted RBP13.4□□□□□ -0.26
PTCH1-215ENST00000547672 FKBPLQ9UIM3 349 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 CRYL1Q9Y2S2 319 aa13.4□□□□□ -0.26
PTCH1-215ENST00000547672 GLYATL1P3A0A0U1RQE8 302 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 EDDM13A0A1B0GTR0 161 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 TSPAN11A1L157 253 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 SYCE1LA8MT33 242 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 E5RI56 91 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 PRMT5O14744 637 aaPredicted RBP13.39□□□□□ -0.27
PTCH1-215ENST00000547672 AURKAO14965 403 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 BNIP3LO60238 219 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 NPHS1O60500 1241 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 CCDC22O60826 627 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 PIGNO95427 931 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 HSPA4LO95757 839 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 PRKCGP05129 697 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 FGF3P11487 239 aaPredicted RBP13.39□□□□□ -0.27
PTCH1-215ENST00000547672 PSMC3P17980 439 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 RPS3P23396 243 aaKnown RBP eCLIP13.39□□□□□ -0.27
PTCH1-215ENST00000547672 ABCG1P45844 678 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 ZBTB16Q05516 673 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 RUNX3Q13761 415 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 PTPRNQ16849 979 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 GEN1Q17RS7 908 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 ZNF805Q5CZA5 627 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 CFAP157Q5JU67 520 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 ERAP2Q6P179 960 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 Q6ZVU0 165 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 PIWIL4Q7Z3Z4 852 aaKnown RBP13.39□□□□□ -0.27
PTCH1-215ENST00000547672 PLD6Q8N2A8 252 aaKnown RBP13.39□□□□□ -0.27
PTCH1-215ENST00000547672 TMIEQ8NEW7 156 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 OR6K2Q8NGY2 324 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 PIWIL2Q8TC59 973 aaKnown RBP13.39□□□□□ -0.27
PTCH1-215ENST00000547672 FRS2Q8WU20 508 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 OR8D1Q8WZ84 308 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 CCT6BQ92526 530 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 LPGAT1Q92604 370 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 KCNJ9Q92806 393 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 PBXIP1Q96AQ6 731 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 NXNL1Q96CM4 212 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 PPP1R16AQ96I34 528 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 CNDP1Q96KN2 507 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 TRMOQ9BU70 441 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 TFB2MQ9H5Q4 396 aaKnown RBP13.39□□□□□ -0.27
PTCH1-215ENST00000547672 BRD9Q9H8M2 597 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 NPHS2Q9NP85 383 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 MRGBPQ9NV56 204 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 KLHL42Q9P2K6 505 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 VTI1BQ9UEU0 232 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 TRMT6Q9UJA5 497 aaKnown RBP13.39□□□□□ -0.27
PTCH1-215ENST00000547672 GNPTGQ9UJJ9 305 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 SORCS3Q9UPU3 1222 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 DOCK6Q96HP0 2047 aa13.39□□□□□ -0.27
PTCH1-215ENST00000547672 OR51F1A6NGY5 319 aa13.38□□□□□ -0.27
PTCH1-215ENST00000547672 G3V2L1 256 aa13.38□□□□□ -0.27
PTCH1-215ENST00000547672 ECI2O75521 394 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms