RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 TMA16Q96EY4 203 aaKnown RBP8.01□□□□□ -1.13
PDLIM5-221ENST00000542407 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.01□□□□□ -1.13
PDLIM5-221ENST00000542407 MRM3Q9HC36 420 aaKnown RBP8.01□□□□□ -1.13
PDLIM5-221ENST00000542407 PIGVQ9NUD9 493 aa8.01□□□□□ -1.13
PDLIM5-221ENST00000542407 SAGE1Q9NXZ1 904 aa8.01□□□□□ -1.13
PDLIM5-221ENST00000542407 GPRC5BQ9NZH0 403 aa8.01□□□□□ -1.13
PDLIM5-221ENST00000542407 TEKT2Q9UIF3 430 aa8.01□□□□□ -1.13
PDLIM5-221ENST00000542407 MFHAS1Q9Y4C4 1052 aa8.01□□□□□ -1.13
PDLIM5-221ENST00000542407 TANC1Q9C0D5 1861 aa8.01□□□□□ -1.13
PDLIM5-221ENST00000542407 CLUHO75153 1309 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 FADS2P1A8MWK0 482 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 CENPBD1B2RD01 187 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 CHURC1-FNTBB4DL54 471 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 PRRT4C9JH25 899 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 E7ESA3 106 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 TMX2-CTNND1H3BSU7 103 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 SNX4O95219 450 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 PIGNO95427 931 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 INHBAP08476 426 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 NCF2P19878 526 aaPredicted RBP8□□□□□ -1.13
PDLIM5-221ENST00000542407 CDH3P22223 829 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 PRMT2P55345 433 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 C21orf59P57076 290 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 NUP107P57740 925 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 MRPS22P82650 360 aaKnown RBP8□□□□□ -1.13
PDLIM5-221ENST00000542407 HTRA3P83110 453 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 CHRNEQ04844 493 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 ELOAQ14241 798 aaKnown RBP8□□□□□ -1.13
PDLIM5-221ENST00000542407 KCNJ11Q14654 390 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 NR6A1Q15406 480 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 NRF1Q16656 503 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 MSS51Q4VC12 460 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 PPP6R3Q5H9R7 873 aaPredicted RBP8□□□□□ -1.13
PDLIM5-221ENST00000542407 FAM182AQ5T1J6 154 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 PM20D1Q6GTS8 502 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 ADGRD1Q6QNK2 874 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 XKR5Q6UX68 686 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 IKBIPQ70UQ0 350 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 LRRC8DQ7L1W4 858 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 FAM124AQ86V42 546 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 FAM131BQ86XD5 332 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 TICAM1Q8IUC6 712 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 GALNT13Q8IUC8 556 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 MMAAQ8IVH4 418 aaKnown RBP8□□□□□ -1.13
PDLIM5-221ENST00000542407 PPIL6Q8IXY8 311 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 CENPSQ8N2Z9 138 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 PGAP3Q96FM1 320 aaPredicted RBP8□□□□□ -1.13
PDLIM5-221ENST00000542407 APOPT1Q96IL0 206 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 CDH19Q9H159 772 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 DHX35Q9H5Z1 703 aaKnown RBP8□□□□□ -1.13
PDLIM5-221ENST00000542407 ZNF696Q9H7X3 374 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 MARCH7Q9H992 704 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 LRRC4Q9HBW1 653 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 CRLF2Q9HC73 371 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 POLHQ9Y253 713 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 AP3M1Q9Y2T2 418 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 PCDHGA2Q9Y5H1 932 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 C3orf80F5H4A9 247 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 ZBTB14O43829 449 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 GPC4O75487 556 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 CAPN1P07384 714 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 SELPP16109 830 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 GOT1P17174 413 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 IDUAP35475 653 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 HADHAP40939 763 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 CDK9P50750 372 aaKnown RBP8□□□□□ -1.13
PDLIM5-221ENST00000542407 P2RX3P56373 397 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 CDKL1Q00532 357 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 SEMA3BQ13214 749 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 FNBP1LQ5T0N5 605 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 OGFRL1Q5TC84 451 aaPredicted RBP8□□□□□ -1.13
PDLIM5-221ENST00000542407 OVOS1Q6IE37 1185 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 ERAP2Q6P179 960 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 CDHR3Q6ZTQ4 885 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 KCTD20Q7Z5Y7 419 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 WACQ9BTA9 647 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 SSU72Q9NP77 194 aaKnown RBP8□□□□□ -1.13
PDLIM5-221ENST00000542407 PAK6Q9NQU5 681 aaPredicted RBP8□□□□□ -1.13
PDLIM5-221ENST00000542407 TBC1D13Q9NVG8 400 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 RCOR3Q9P2K3 495 aaPredicted RBP8□□□□□ -1.13
PDLIM5-221ENST00000542407 EBF1Q9UH73 591 aa8□□□□□ -1.13
PDLIM5-221ENST00000542407 H3BNX3 289 aa7.99□□□□□ -1.13
PDLIM5-221ENST00000542407 CCNT2O60583 730 aaKnown RBP7.99□□□□□ -1.13
PDLIM5-221ENST00000542407 FAM155BO75949 473 aa7.99□□□□□ -1.13
PDLIM5-221ENST00000542407 SERPINA6P08185 405 aa7.99□□□□□ -1.13
PDLIM5-221ENST00000542407 USP17L7P0C7H9 530 aa7.99□□□□□ -1.13
PDLIM5-221ENST00000542407 PPARGP37231 505 aaPredicted RBP7.99□□□□□ -1.13
PDLIM5-221ENST00000542407 ETV4P43268 484 aa7.99□□□□□ -1.13
PDLIM5-221ENST00000542407 CDH15P55291 814 aa7.99□□□□□ -1.13
PDLIM5-221ENST00000542407 BCAR1P56945 870 aa7.99□□□□□ -1.13
PDLIM5-221ENST00000542407 PRAMEP78395 509 aa7.99□□□□□ -1.13
PDLIM5-221ENST00000542407 SCAPQ12770 1279 aa7.99□□□□□ -1.13
PDLIM5-221ENST00000542407 EIF4EBP2Q13542 120 aaPredicted RBP7.99□□□□□ -1.13
PDLIM5-221ENST00000542407 KCNJ8Q15842 424 aa7.99□□□□□ -1.13
PDLIM5-221ENST00000542407 FUT11Q495W5 492 aa7.99□□□□□ -1.13
PDLIM5-221ENST00000542407 NOMO2Q5JPE7 1267 aa7.99□□□□□ -1.13
PDLIM5-221ENST00000542407 FAM209BQ5JX69 171 aa7.99□□□□□ -1.13
PDLIM5-221ENST00000542407 ATG16L1Q676U5 607 aa7.99□□□□□ -1.13
PDLIM5-221ENST00000542407 DARS2Q6PI48 645 aaKnown RBP7.99□□□□□ -1.13
PDLIM5-221ENST00000542407 DCDC5Q6ZRR9 648 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms