RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 FASTKD1Q53R41 847 aaKnown RBP6.64□□□□□ -1.35
USP28-202ENST00000535607 CT83Q5H943 113 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 MDH1BQ5I0G3 518 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 FNBP1LQ5T0N5 605 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 FAXCQ5TGI0 409 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 IRAK1BP1Q5VVH5 260 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 GADL1Q6ZQY3 521 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 NEK10Q6ZWH5 1172 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 CYS1Q717R9 158 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 NIPA1Q7RTP0 329 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 TTC7BQ86TV6 843 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 TTC30AQ86WT1 665 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 COLGALT2Q8IYK4 626 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 NDUFAF2Q8N183 169 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 GPD1LQ8N335 351 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 SLC25A41Q8N5S1 370 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 PACRGLQ8N7B6 248 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 PPM1NQ8N819 430 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 CDYL2Q8N8U2 506 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 REPS2Q8NFH8 660 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 RP9Q8TA86 221 aaKnown RBP6.64□□□□□ -1.35
USP28-202ENST00000535607 FNIP1Q8TF40 1166 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 AUTS2Q8WXX7 1259 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 CCDC127Q96BQ5 260 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 FUBP3Q96I24 572 aaKnown RBP eCLIP6.64□□□□□ -1.35
USP28-202ENST00000535607 SERAC1Q96JX3 654 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 CLPTM1LQ96KA5 538 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 CNDP2Q96KP4 475 aaKnown RBP6.64□□□□□ -1.35
USP28-202ENST00000535607 FIZ1Q96SL8 496 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 C11orf70Q9BRQ4 267 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 TMEM121Q9BTD3 319 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 APOL6Q9BWW8 343 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 YTHDF1Q9BYJ9 559 aaKnown RBP6.64□□□□□ -1.35
USP28-202ENST00000535607 TRIM15Q9C019 465 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 SENP6Q9GZR1 1112 aaPredicted RBP6.64□□□□□ -1.35
USP28-202ENST00000535607 EFCAB1Q9HAE3 211 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 BARX1Q9HBU1 254 aaPredicted RBP6.64□□□□□ -1.35
USP28-202ENST00000535607 TMEM165Q9HC07 324 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 TRPV5Q9NQA5 729 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 FBXO28Q9NVF7 368 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 FBXO40Q9UH90 709 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 CHORDC1Q9UHD1 332 aaPredicted RBP6.64□□□□□ -1.35
USP28-202ENST00000535607 APPL1Q9UKG1 709 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 CCPG1Q9ULG6 757 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 EDARQ9UNE0 448 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 TEX264Q9Y6I9 313 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 CEPT1Q9Y6K0 416 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 NUMBLQ9Y6R0 609 aa6.64□□□□□ -1.35
USP28-202ENST00000535607 COL11A1P12107 1806 aaPredicted RBP6.64□□□□□ -1.35
USP28-202ENST00000535607 A0A0G2JNJ9 132 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 PRSS38A1L453 326 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 RGSL1A5PLK6 1076 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 HTR3EA5X5Y0 456 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 KBTBD13C9JR72 458 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 APOC4-APOC2K7ER74 178 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 AREL1O15033 823 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 MED7O43513 233 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 CHMP2AO43633 222 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 NUAK1O60285 661 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 CNOT3O75175 753 aaKnown RBP6.63□□□□□ -1.35
USP28-202ENST00000535607 TSPAN15O95858 294 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 APOEP02649 317 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 APOC2P02655 101 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 APOA4P06727 396 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 C1QTNF9P0C862 333 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 ZSCAN5DPP0CG00 497 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 KRT10P13645 584 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 PRKCHP24723 683 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 SLC5A2P31639 672 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 RPL22P35268 128 aaKnown RBP6.63□□□□□ -1.35
USP28-202ENST00000535607 HOXD12P35452 270 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 ALDH3B2P48448 385 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 PCYT1AP49585 367 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 MEOX1P50221 254 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 AFF3P51826 1226 aaKnown RBP6.63□□□□□ -1.35
USP28-202ENST00000535607 EIF3EP60228 445 aaKnown RBP6.63□□□□□ -1.35
USP28-202ENST00000535607 NAA20P61599 178 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 NOMO3P69849 1222 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 CCNA1P78396 465 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 TXNL4AP83876 142 aaKnown RBP6.63□□□□□ -1.35
USP28-202ENST00000535607 CD83Q01151 205 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 OTUD4Q01804 1114 aaKnown RBP6.63□□□□□ -1.35
USP28-202ENST00000535607 CYP24A1Q07973 514 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 MESP2Q0VG99 397 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 DPYSL3Q14195 570 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 SSPNQ14714 243 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 PDCD1Q15116 288 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 LLGL1Q15334 1064 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 KCNA10Q16322 511 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 MOGQ16653 247 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 KCTD19Q17RG1 926 aaPredicted RBP6.63□□□□□ -1.35
USP28-202ENST00000535607 FAM110CQ1W6H9 321 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 TOR2AQ5JU69 321 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 TREML2Q5T2D2 321 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 ZNF648Q5T619 568 aaPredicted RBP6.63□□□□□ -1.35
USP28-202ENST00000535607 OGFOD2Q6N063 350 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 IYDQ6PHW0 289 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 DARS2Q6PI48 645 aaKnown RBP6.63□□□□□ -1.35
USP28-202ENST00000535607 FAM180AQ6UWF9 173 aa6.63□□□□□ -1.35
USP28-202ENST00000535607 MFSD7Q6UXD7 560 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms