RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	CDCA5	Q96FF9	252 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	CSF3R	Q99062	836 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	SDF4	Q9BRK5	362 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	KRTAP2-2	Q9BYT5	123 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	SMARCAD1	Q9H4L7	1026 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	FKRP	Q9H9S5	495 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	PCDH9	Q9HC56	1237 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	RRP7BP	Q9NSQ0	103 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	ABCF3	Q9NUQ8	709 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	DONSON	Q9NYP3	566 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	LSM4	Q9Y4Z0	139 aa	Known RBP	2.79	□□□□□ -1.96
CD44-238	ENST00000534296	STON1	Q9Y6Q2	735 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	SCIN	Q9Y6U3	715 aa		2.79	□□□□□ -1.96
CD44-238	ENST00000534296	FSD2	A1L4K1	749 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	PRAC2	D3DTV9	90 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	NPIPB11	E5RHQ5	1161 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	FAM72C	H0Y354	149 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	BMPR1B	O00238	502 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	SEC14L5	O43304	696 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	GRID2	O43424	1007 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	FGF17	O60258	216 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	TSPAN9	O75954	239 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	DDN	O94850	711 aa	Predicted RBP	2.78	□□□□□ -1.96
CD44-238	ENST00000534296	TMEM63A	O94886	807 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	DDX58	O95786	925 aa	Known RBP	2.78	□□□□□ -1.96
CD44-238	ENST00000534296	IGLV2-11	P01706	119 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	ACADM	P11310	421 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	ITGAX	P20702	1163 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	MAOA	P21397	527 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	BSG	P35613	385 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	CPOX	P36551	454 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	RPS3A	P61247	264 aa	Known RBP	2.78	□□□□□ -1.96
CD44-238	ENST00000534296	EEF1A1	P68104	462 aa	Known RBP	2.78	□□□□□ -1.96
CD44-238	ENST00000534296	PRAME	P78395	509 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	FOXM1	Q08050	763 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	GRIK3	Q13003	919 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	ZBTB17	Q13105	803 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	NAE1	Q13564	534 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	CRYM	Q14894	314 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	EFNB3	Q15768	340 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	TBCE	Q15813	527 aa	Predicted RBP	2.78	□□□□□ -1.96
CD44-238	ENST00000534296	ZSCAN23	Q3MJ62	389 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	SLC45A4	Q5BKX6	768 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	C6orf141	Q5SZD1	244 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	STPG1	Q5TH74	334 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	FAM72A	Q5TYM5	149 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	EEF1A1P5	Q5VTE0	462 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	FAM72D	Q6L9T8	149 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	TRNP1	Q6NT89	227 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	CDC73	Q6P1J9	531 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	INO80C	Q6PI98	192 aa	Predicted RBP	2.78	□□□□□ -1.96
CD44-238	ENST00000534296	TMTC3	Q6ZXV5	915 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	MTSS1L	Q765P7	747 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	CACNA2D4	Q7Z3S7	1137 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	NOXA1	Q86UR1	476 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	FAM72B	Q86X60	149 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	DCUN1D3	Q8IWE4	304 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	DHX40	Q8IX18	779 aa	Known RBP	2.78	□□□□□ -1.96
CD44-238	ENST00000534296	SLC35F3	Q8IY50	421 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	TMTC2	Q8N394	836 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	FRMD1	Q8N878	549 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	CADM4	Q8NFZ8	388 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	SPATA20	Q8TB22	786 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	SORCS1	Q8WY21	1168 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	GTF3C6	Q969F1	213 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	NODAL	Q96S42	347 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	FAM110A	Q9BQ89	295 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	TMEM47	Q9BQJ4	181 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	HEMGN	Q9BXL5	484 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	MAK16	Q9BXY0	300 aa	Known RBP	2.78	□□□□□ -1.96
CD44-238	ENST00000534296	FTO	Q9C0B1	505 aa	Known RBP eCLIP	2.78	□□□□□ -1.96
CD44-238	ENST00000534296	SYNC	Q9H7C4	482 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	PLEKHA5	Q9HAU0	1116 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	MKKS	Q9NPJ1	570 aa	Predicted RBP	2.78	□□□□□ -1.96
CD44-238	ENST00000534296	HINT3	Q9NQE9	182 aa	Known RBP	2.78	□□□□□ -1.96
CD44-238	ENST00000534296	HSPB7	Q9UBY9	170 aa		2.78	□□□□□ -1.96
CD44-238	ENST00000534296	TDRD9	Q8NDG6	1382 aa	Known RBP	2.77	□□□□□ -1.97
CD44-238	ENST00000534296		A0A1W2PS18	150 aa		2.77	□□□□□ -1.97
CD44-238	ENST00000534296	PI4KAP2	A4QPH2	592 aa		2.77	□□□□□ -1.97
CD44-238	ENST00000534296	PGPEP1L	A6NFU8	196 aa		2.77	□□□□□ -1.97
CD44-238	ENST00000534296		F5H0A9	414 aa	Predicted RBP	2.77	□□□□□ -1.97
CD44-238	ENST00000534296	C16orf97	H3BN30	126 aa		2.77	□□□□□ -1.97
CD44-238	ENST00000534296	TULP2	O00295	520 aa		2.77	□□□□□ -1.97
CD44-238	ENST00000534296	LMX1B	O60663	402 aa		2.77	□□□□□ -1.97
CD44-238	ENST00000534296	IPO7	O95373	1038 aa	Known RBP	2.77	□□□□□ -1.97
CD44-238	ENST00000534296	CRYAA	P02489	173 aa		2.77	□□□□□ -1.97
CD44-238	ENST00000534296	CLEC3B	P05452	202 aa		2.77	□□□□□ -1.97
CD44-238	ENST00000534296	UMOD	P07911	640 aa		2.77	□□□□□ -1.97
CD44-238	ENST00000534296	G6PD	P11413	515 aa		2.77	□□□□□ -1.97
CD44-238	ENST00000534296	EDN2	P20800	178 aa		2.77	□□□□□ -1.97
CD44-238	ENST00000534296	BDKRB2	P30411	391 aa		2.77	□□□□□ -1.97
CD44-238	ENST00000534296	CDA	P32320	146 aa		2.77	□□□□□ -1.97
CD44-238	ENST00000534296	EIF2S3	P41091	472 aa	Known RBP	2.77	□□□□□ -1.97
CD44-238	ENST00000534296	PIK3CA	P42336	1068 aa		2.77	□□□□□ -1.97
CD44-238	ENST00000534296	FMO5	P49326	533 aa		2.77	□□□□□ -1.97
CD44-238	ENST00000534296	CSNK2A1	P68400	391 aa	Predicted RBP	2.77	□□□□□ -1.97
CD44-238	ENST00000534296	OLR1	P78380	273 aa		2.77	□□□□□ -1.97
CD44-238	ENST00000534296	PDE1B	Q01064	536 aa		2.77	□□□□□ -1.97
CD44-238	ENST00000534296	LRMP	Q12912	555 aa		2.77	□□□□□ -1.97
CD44-238	ENST00000534296	EIF4A2	Q14240	407 aa	Known RBP	2.77	□□□□□ -1.97

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