RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 RFLNAQ6ZTI6 216 aa23.49■■□□□ 1.35
CPSF1-202ENST00000527827 AGBL5Q8NDL9 886 aa23.49■■□□□ 1.35
CPSF1-202ENST00000527827 ART4Q93070 314 aa23.49■■□□□ 1.35
CPSF1-202ENST00000527827 CDH19Q9H159 772 aa23.49■■□□□ 1.35
CPSF1-202ENST00000527827 ZWILCHQ9H900 591 aa23.49■■□□□ 1.35
CPSF1-202ENST00000527827 GOLGA6AQ9NYA3 693 aa23.49■■□□□ 1.35
CPSF1-202ENST00000527827 MYO6Q9UM54 1294 aa23.49■■□□□ 1.35
CPSF1-202ENST00000527827 PPIL1Q9Y3C6 166 aa23.49■■□□□ 1.35
CPSF1-202ENST00000527827 LIFP15018 202 aa23.48■■□□□ 1.35
CPSF1-202ENST00000527827 NFKBIAP25963 317 aa23.48■■□□□ 1.35
CPSF1-202ENST00000527827 ACTR1BP42025 376 aa23.48■■□□□ 1.35
CPSF1-202ENST00000527827 ACTR1AP61163 376 aa23.48■■□□□ 1.35
CPSF1-202ENST00000527827 DPTQ07507 201 aa23.48■■□□□ 1.35
CPSF1-202ENST00000527827 DPYSL2Q16555 572 aa23.48■■□□□ 1.35
CPSF1-202ENST00000527827 DDA1Q9BW61 102 aa23.48■■□□□ 1.35
CPSF1-202ENST00000527827 OCIAD1Q9NX40 245 aa23.48■■□□□ 1.35
CPSF1-202ENST00000527827 KCNK4Q9NYG8 393 aa23.48■■□□□ 1.35
CPSF1-202ENST00000527827 CNOT8Q9UFF9 292 aaKnown RBP23.48■■□□□ 1.35
CPSF1-202ENST00000527827 TMEM98Q9Y2Y6 226 aa23.48■■□□□ 1.35
CPSF1-202ENST00000527827 H3BRJ5 948 aa23.47■■□□□ 1.35
CPSF1-202ENST00000527827 FTLP02792 175 aaPredicted RBP23.47■■□□□ 1.35
CPSF1-202ENST00000527827 TCF4P15884 667 aa23.47■■□□□ 1.35
CPSF1-202ENST00000527827 CTPS1P17812 591 aa23.47■■□□□ 1.35
CPSF1-202ENST00000527827 PEX6Q13608 980 aa23.47■■□□□ 1.35
CPSF1-202ENST00000527827 BORAQ6PGQ7 559 aa23.47■■□□□ 1.35
CPSF1-202ENST00000527827 CLEC17AQ6ZS10 378 aa23.47■■□□□ 1.35
CPSF1-202ENST00000527827 POLNQ7Z5Q5 900 aa23.47■■□□□ 1.35
CPSF1-202ENST00000527827 IL22RA1Q8N6P7 574 aa23.47■■□□□ 1.35
CPSF1-202ENST00000527827 CCDC112Q8NEF3 446 aa23.47■■□□□ 1.35
CPSF1-202ENST00000527827 PIH1D2Q8WWB5 315 aa23.47■■□□□ 1.35
CPSF1-202ENST00000527827 OR2M4Q96R27 311 aa23.47■■□□□ 1.35
CPSF1-202ENST00000527827 DPYSL5Q9BPU6 564 aa23.47■■□□□ 1.35
CPSF1-202ENST00000527827 ABCG8Q9H221 673 aa23.47■■□□□ 1.35
CPSF1-202ENST00000527827 ADNPQ9H2P0 1102 aa23.47■■□□□ 1.35
CPSF1-202ENST00000527827 ANO10Q9NW15 660 aa23.47■■□□□ 1.35
CPSF1-202ENST00000527827 CD84Q9UIB8 345 aa23.47■■□□□ 1.35
CPSF1-202ENST00000527827 COL12A1Q99715 3063 aa23.46■■□□□ 1.35
CPSF1-202ENST00000527827 LRRC53A6NM62 1247 aa23.46■■□□□ 1.35
CPSF1-202ENST00000527827 GZMAP12544 262 aa23.46■■□□□ 1.35
CPSF1-202ENST00000527827 CSTF2P33240 577 aaKnown RBP eCLIP23.46■■□□□ 1.35
CPSF1-202ENST00000527827 PCK1P35558 622 aa23.46■■□□□ 1.35
CPSF1-202ENST00000527827 GPR1P46091 355 aa23.46■■□□□ 1.35
CPSF1-202ENST00000527827 SMTNL2Q2TAL5 461 aa23.46■■□□□ 1.35
CPSF1-202ENST00000527827 PYCR3Q53H96 274 aa23.46■■□□□ 1.35
CPSF1-202ENST00000527827 RALGPS1Q5JS13 557 aa23.46■■□□□ 1.35
CPSF1-202ENST00000527827 ARMC12Q5T9G4 340 aa23.46■■□□□ 1.35
CPSF1-202ENST00000527827 TMCO3Q6UWJ1 677 aa23.46■■□□□ 1.35
CPSF1-202ENST00000527827 ADAMTSL4Q6UY14 1074 aa23.46■■□□□ 1.35
CPSF1-202ENST00000527827 USP45Q70EL2 814 aa23.46■■□□□ 1.35
CPSF1-202ENST00000527827 ZNF571Q7Z3V5 609 aaPredicted RBP23.46■■□□□ 1.35
CPSF1-202ENST00000527827 CSPG4P5Q96PW8 444 aa23.46■■□□□ 1.35
CPSF1-202ENST00000527827 SMIM14Q96QK8 99 aa23.46■■□□□ 1.35
CPSF1-202ENST00000527827 HAUS4Q9H6D7 363 aa23.46■■□□□ 1.35
CPSF1-202ENST00000527827 SLC39A1Q9NY26 324 aa23.46■■□□□ 1.35
CPSF1-202ENST00000527827 FLNCQ14315 2725 aa23.46■■□□□ 1.35
CPSF1-202ENST00000527827 DOPEY2Q9Y3R5 2298 aa23.45■■□□□ 1.35
CPSF1-202ENST00000527827 DDX3XO00571 662 aaKnown RBP eCLIP23.45■■□□□ 1.34
CPSF1-202ENST00000527827 PDHA1P08559 390 aa23.45■■□□□ 1.34
CPSF1-202ENST00000527827 ARL4AP40617 200 aa23.45■■□□□ 1.34
CPSF1-202ENST00000527827 MMP13P45452 471 aa23.45■■□□□ 1.34
CPSF1-202ENST00000527827 FASLGP48023 281 aa23.45■■□□□ 1.34
CPSF1-202ENST00000527827 TLE1Q04724 770 aa23.45■■□□□ 1.34
CPSF1-202ENST00000527827 E4F1Q66K89 784 aaPredicted RBP23.45■■□□□ 1.34
CPSF1-202ENST00000527827 TMEM71Q6P5X7 295 aa23.45■■□□□ 1.34
CPSF1-202ENST00000527827 SASS6Q6UVJ0 657 aa23.45■■□□□ 1.34
CPSF1-202ENST00000527827 TRIM74Q86UV6 250 aa23.45■■□□□ 1.34
CPSF1-202ENST00000527827 ZNF761Q86XN6 746 aaPredicted RBP23.45■■□□□ 1.34
CPSF1-202ENST00000527827 CACNA2D3Q8IZS8 1091 aa23.45■■□□□ 1.34
CPSF1-202ENST00000527827 BBS5Q8N3I7 341 aa23.45■■□□□ 1.34
CPSF1-202ENST00000527827 BMPERQ8N8U9 685 aa23.45■■□□□ 1.34
CPSF1-202ENST00000527827 ZNF653Q96CK0 615 aa23.45■■□□□ 1.34
CPSF1-202ENST00000527827 AP2M1Q96CW1 435 aa23.45■■□□□ 1.34
CPSF1-202ENST00000527827 PDP2Q9P2J9 529 aa23.45■■□□□ 1.34
CPSF1-202ENST00000527827 TRBV23OR9-2A0A075B6M9 112 aa23.44■■□□□ 1.34
CPSF1-202ENST00000527827 EFCAB7A8K855 629 aa23.44■■□□□ 1.34
CPSF1-202ENST00000527827 B4E171 279 aa23.44■■□□□ 1.34
CPSF1-202ENST00000527827 FZD6O60353 706 aa23.44■■□□□ 1.34
CPSF1-202ENST00000527827 RAD1O60671 282 aa23.44■■□□□ 1.34
CPSF1-202ENST00000527827 TSPAN7P41732 249 aa23.44■■□□□ 1.34
CPSF1-202ENST00000527827 POLE2P56282 527 aa23.44■■□□□ 1.34
CPSF1-202ENST00000527827 GPLD1P80108 840 aa23.44■■□□□ 1.34
CPSF1-202ENST00000527827 PTSQ03393 145 aa23.44■■□□□ 1.34
CPSF1-202ENST00000527827 ASIC2Q16515 512 aa23.44■■□□□ 1.34
CPSF1-202ENST00000527827 STX1AQ16623 288 aa23.44■■□□□ 1.34
CPSF1-202ENST00000527827 COLEC12Q5KU26 742 aa23.44■■□□□ 1.34
CPSF1-202ENST00000527827 MARC1Q5VT66 337 aa23.44■■□□□ 1.34
CPSF1-202ENST00000527827 LRRC66Q68CR7 880 aa23.44■■□□□ 1.34
CPSF1-202ENST00000527827 ATPAF2Q8N5M1 289 aa23.44■■□□□ 1.34
CPSF1-202ENST00000527827 SLC37A2Q8TED4 501 aa23.44■■□□□ 1.34
CPSF1-202ENST00000527827 HSPH1Q92598 858 aa23.44■■□□□ 1.34
CPSF1-202ENST00000527827 SCAMP4Q969E2 229 aa23.44■■□□□ 1.34
CPSF1-202ENST00000527827 AGAP2Q99490 1192 aa23.44■■□□□ 1.34
CPSF1-202ENST00000527827 ASPSCR1Q9BZE9 553 aa23.44■■□□□ 1.34
CPSF1-202ENST00000527827 SCINQ9Y6U3 715 aa23.44■■□□□ 1.34
CPSF1-202ENST00000527827 EML2O95834 649 aa23.43■■□□□ 1.34
CPSF1-202ENST00000527827 CDH6P55285 790 aa23.43■■□□□ 1.34
CPSF1-202ENST00000527827 SRSF1Q07955 248 aaKnown RBP eCLIP23.43■■□□□ 1.34
CPSF1-202ENST00000527827 KCNAB2Q13303 367 aa23.43■■□□□ 1.34
CPSF1-202ENST00000527827 BOLA3Q53S33 107 aa23.43■■□□□ 1.34
CPSF1-202ENST00000527827 DCAF12Q5T6F0 453 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms