RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 TREML1Q86YW5 311 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 PHACTR4Q8IZ21 702 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 DBF4BQ8NFT6 615 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 TWIST2Q8WVJ9 160 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 TTPALQ9BTX7 342 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 SLC25A51Q9H1U9 297 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 USP29Q9HBJ7 922 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 GKN1Q9NS71 199 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 LNPEPQ9UIQ6 1025 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 POLR3HQ9Y535 204 aaPredicted RBP11.69□□□□□ -0.54
SYNPO-204ENST00000519664 TNPO3Q9Y5L0 923 aaKnown RBP11.69□□□□□ -0.54
SYNPO-204ENST00000519664 ARL5AQ9Y689 179 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 J3KR12 359 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 DUSP11O75319 330 aaKnown RBP11.68□□□□□ -0.54
SYNPO-204ENST00000519664 SLC22A3O75751 556 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 MLYCDO95822 493 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 DLGAP3O95886 979 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 EDN1P05305 212 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 CKMT2P17540 419 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 NR4A1P22736 598 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 S100A1P23297 94 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 ENPEPQ07075 957 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 LRRC73Q5JTD7 316 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 NOL9Q5SY16 702 aaKnown RBP11.68□□□□□ -0.54
SYNPO-204ENST00000519664 PNPT1Q8TCS8 783 aaKnown RBP11.68□□□□□ -0.54
SYNPO-204ENST00000519664 NAT14Q8WUY8 206 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 UGT2B28Q9BY64 529 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 MRPL9Q9BYD2 267 aaKnown RBP11.68□□□□□ -0.54
SYNPO-204ENST00000519664 EURLQ9NYK6 297 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 USE1Q9NZ43 259 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 HLA-DQB2P05538 268 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 CYP4B1P13584 511 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 EFNA1P20827 205 aaPredicted RBP11.68□□□□□ -0.54
SYNPO-204ENST00000519664 TSTD2Q5T7W7 516 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 METTL21CQ5VZV1 264 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 B3GNT9Q6UX72 402 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 CPNE9Q8IYJ1 553 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 STK40Q8N2I9 435 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 LRTOMTQ8WZ04 291 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 TNKS2Q9H2K2 1166 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 PLGRKTQ9HBL7 147 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 TEKT2Q9UIF3 430 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 KCTD3Q9Y597 815 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 IRS2Q9Y4H2 1338 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 AKAP11Q9UKA4 1901 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 A0A1W2PQ67 120 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 FAM159BA6NKW6 160 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 MEIS3P2A8K0S8 358 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 FAM20BO75063 409 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 KCNH1O95259 989 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 RHOQP17081 205 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 TACR2P21452 398 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 WARSP23381 471 aaKnown RBP11.68□□□□□ -0.54
SYNPO-204ENST00000519664 ITPKAP23677 461 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 GABRR2P28476 465 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 HSPA7P48741 367 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 OR9I1Q8NGQ6 314 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 RORBQ92753 470 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 OR52E6Q96RD3 313 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 SMOQ99835 787 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 DKK3Q9UBP4 350 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 TMCC3Q9ULS5 477 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 MYH7BA7E2Y1 1941 aa11.68□□□□□ -0.54
SYNPO-204ENST00000519664 PRMT5O14744 637 aaPredicted RBP11.67□□□□□ -0.54
SYNPO-204ENST00000519664 DNAJA2O60884 412 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 SLC25A14O95258 325 aaPredicted RBP11.67□□□□□ -0.54
SYNPO-204ENST00000519664 NDST3O95803 873 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 XRCC1P18887 633 aaPredicted RBP11.67□□□□□ -0.54
SYNPO-204ENST00000519664 THOP1P52888 689 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 PRKAG1P54619 331 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 C21orf59P57076 290 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 SOX4Q06945 474 aaPredicted RBP11.67□□□□□ -0.54
SYNPO-204ENST00000519664 HNRNPDQ14103 355 aaKnown RBP11.67□□□□□ -0.54
SYNPO-204ENST00000519664 USP41Q3LFD5 358 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 FGD3Q5JSP0 725 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 RBM20Q5T481 1227 aaKnown RBP11.67□□□□□ -0.54
SYNPO-204ENST00000519664 OFCC1Q8IZS5 231 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 RTL3Q8N8U3 475 aaKnown RBP11.67□□□□□ -0.54
SYNPO-204ENST00000519664 UROC1Q96N76 676 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 SLC9A7Q96T83 725 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 ATG10Q9H0Y0 220 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 TIMMDC1Q9NPL8 285 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 H3BN98 237 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 SNAI1O95863 264 aaPredicted RBP11.67□□□□□ -0.54
SYNPO-204ENST00000519664 CES1P23141 567 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 CRATP43155 626 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 GPR15P49685 360 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 ACTR3P61158 418 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 IKBKEQ14164 716 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 C11orf91Q3C1V1 193 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 SLC9A4Q6AI14 798 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 ANKRD23Q86SG2 305 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 TMEM132CQ8N3T6 1108 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 ZNF778Q96MU6 729 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 GIMAP4Q9NUV9 329 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 H2AFY2Q9P0M6 372 aaPredicted RBP11.67□□□□□ -0.54
SYNPO-204ENST00000519664 FKBPLQ9UIM3 349 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 PHLPP1O60346 1717 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 PIP5K1BO14986 540 aa11.67□□□□□ -0.54
SYNPO-204ENST00000519664 IRAK2O43187 625 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms