RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 PRKRIP1Q9H875 184 aaPredicted RBP5.58□□□□□ -1.52
SF3B1-212ENST00000496458 UBN1Q9NPG3 1134 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 ASAH2Q9NR71 780 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 PADI1Q9ULC6 663 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 GTF2A1LQ9UNN4 478 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 ZNF711Q9Y462 761 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 LOXL2Q9Y4K0 774 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 RB1CC1Q8TDY2 1594 aa5.58□□□□□ -1.52
SF3B1-212ENST00000496458 KDM3AQ9Y4C1 1321 aa5.57□□□□□ -1.52
SF3B1-212ENST00000496458 NPHP1O15259 732 aa5.57□□□□□ -1.52
SF3B1-212ENST00000496458 CENPBP07199 599 aaPredicted RBP5.57□□□□□ -1.52
SF3B1-212ENST00000496458 ITGA2P17301 1181 aa5.57□□□□□ -1.52
SF3B1-212ENST00000496458 IL15P40933 162 aaPredicted RBP5.57□□□□□ -1.52
SF3B1-212ENST00000496458 CLCN3P51790 818 aa5.57□□□□□ -1.52
SF3B1-212ENST00000496458 SYT16Q17RD7 645 aa5.57□□□□□ -1.52
SF3B1-212ENST00000496458 KRTAP24-1Q3LI83 254 aa5.57□□□□□ -1.52
SF3B1-212ENST00000496458 GPATCH4Q5T3I0 446 aaKnown RBP5.57□□□□□ -1.52
SF3B1-212ENST00000496458 DUS1LQ6P1R4 473 aaKnown RBP5.57□□□□□ -1.52
SF3B1-212ENST00000496458 INO80CQ6PI98 192 aaPredicted RBP5.57□□□□□ -1.52
SF3B1-212ENST00000496458 TSPYL6Q8N831 410 aa5.57□□□□□ -1.52
SF3B1-212ENST00000496458 ABTB1Q969K4 478 aaPredicted RBP5.57□□□□□ -1.52
SF3B1-212ENST00000496458 TBATAQ96M53 351 aa5.57□□□□□ -1.52
SF3B1-212ENST00000496458 MTERF1Q99551 399 aaKnown RBP5.57□□□□□ -1.52
SF3B1-212ENST00000496458 C1QTNF5Q9BXJ0 243 aa5.57□□□□□ -1.52
SF3B1-212ENST00000496458 HAO1Q9UJM8 370 aa5.57□□□□□ -1.52
SF3B1-212ENST00000496458 POU2F3Q9UKI9 436 aa5.57□□□□□ -1.52
SF3B1-212ENST00000496458 NACADO15069 1562 aa5.57□□□□□ -1.52
SF3B1-212ENST00000496458 PLGP00747 810 aaPredicted RBP5.56□□□□□ -1.52
SF3B1-212ENST00000496458 EGFP01133 1207 aa5.56□□□□□ -1.52
SF3B1-212ENST00000496458 CRYAAP02489 173 aa5.56□□□□□ -1.52
SF3B1-212ENST00000496458 CETPP11597 493 aa5.56□□□□□ -1.52
SF3B1-212ENST00000496458 IL7RP16871 459 aa5.56□□□□□ -1.52
SF3B1-212ENST00000496458 CORO1AP31146 461 aaKnown RBP5.56□□□□□ -1.52
SF3B1-212ENST00000496458 GNL1P36915 607 aaPredicted RBP5.56□□□□□ -1.52
SF3B1-212ENST00000496458 PIP4K2AP48426 406 aaPredicted RBP5.56□□□□□ -1.52
SF3B1-212ENST00000496458 KRTAP10-6P60371 365 aaPredicted RBP5.56□□□□□ -1.52
SF3B1-212ENST00000496458 RBBP5Q15291 538 aaKnown RBP5.56□□□□□ -1.52
SF3B1-212ENST00000496458 CDC73Q6P1J9 531 aa5.56□□□□□ -1.52
SF3B1-212ENST00000496458 C1orf87Q8N0U7 546 aa5.56□□□□□ -1.52
SF3B1-212ENST00000496458 PCDH20Q8N6Y1 951 aaKnown RBP5.56□□□□□ -1.52
SF3B1-212ENST00000496458 PSPC1Q8WXF1 523 aaKnown RBP5.56□□□□□ -1.52
SF3B1-212ENST00000496458 EVI5LQ96CN4 794 aa5.56□□□□□ -1.52
SF3B1-212ENST00000496458 ORAI1Q96D31 301 aa5.56□□□□□ -1.52
SF3B1-212ENST00000496458 CDCA5Q96FF9 252 aa5.56□□□□□ -1.52
SF3B1-212ENST00000496458 PCYT2Q99447 389 aa5.56□□□□□ -1.52
SF3B1-212ENST00000496458 PIP5K1AQ99755 562 aa5.56□□□□□ -1.52
SF3B1-212ENST00000496458 PLEKHA5Q9HAU0 1116 aa5.56□□□□□ -1.52
SF3B1-212ENST00000496458 TERF2IPQ9NYB0 399 aa5.56□□□□□ -1.52
SF3B1-212ENST00000496458 TAS2R10Q9NYW0 307 aa5.56□□□□□ -1.52
SF3B1-212ENST00000496458 C9orf78Q9NZ63 289 aaPredicted RBP5.56□□□□□ -1.52
SF3B1-212ENST00000496458 RALYQ9UKM9 306 aaKnown RBP5.56□□□□□ -1.52
SF3B1-212ENST00000496458 ZCCHC6Q5VYS8 1495 aaKnown RBP5.56□□□□□ -1.52
SF3B1-212ENST00000496458 EIF3CLB5ME19 914 aaKnown RBP5.55□□□□□ -1.52
SF3B1-212ENST00000496458 C16orf97H3BN30 126 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 KRT10P13645 584 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 MYOD1P15172 320 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 USP8P40818 1118 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 RARSP54136 660 aaKnown RBP5.55□□□□□ -1.52
SF3B1-212ENST00000496458 CSNK2A1P68400 391 aaPredicted RBP5.55□□□□□ -1.52
SF3B1-212ENST00000496458 PDE1BQ01064 536 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 FOXM1Q08050 763 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 SIGIRRQ6IA17 410 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 ZNF280DQ6N043 979 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 TSSK4Q6SA08 328 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 KMT5CQ86Y97 462 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 DCUN1D3Q8IWE4 304 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.55□□□□□ -1.52
SF3B1-212ENST00000496458 RNF113BQ8IZP6 322 aaKnown RBP5.55□□□□□ -1.52
SF3B1-212ENST00000496458 CSNK2A3Q8NEV1 391 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 OR13A1Q8NGR1 328 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 HMGCLL1Q8TB92 370 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 METTL6Q8TCB7 284 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 GRAMD2BQ96HH9 432 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 HES6Q96HZ4 224 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 UHRF2Q96PU4 802 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 PCGF1Q9BSM1 259 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 MMP28Q9H239 520 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 SLC28A3Q9HAS3 691 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 SEBOXQ9HB31 216 aaPredicted RBP5.55□□□□□ -1.52
SF3B1-212ENST00000496458 PREBQ9HCU5 417 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 KLHL1Q9NR64 748 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 ABCF3Q9NUQ8 709 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 TMEM30AQ9NV96 361 aa5.55□□□□□ -1.52
SF3B1-212ENST00000496458 A0A1B0GVC2 190 aa5.54□□□□□ -1.52
SF3B1-212ENST00000496458 ATP1A1P05023 1023 aaKnown RBP5.54□□□□□ -1.52
SF3B1-212ENST00000496458 UBL4AP11441 157 aa5.54□□□□□ -1.52
SF3B1-212ENST00000496458 ATP1A3P13637 1013 aa5.54□□□□□ -1.52
SF3B1-212ENST00000496458 ICAM3P32942 547 aa5.54□□□□□ -1.52
SF3B1-212ENST00000496458 ATF7IPQ6VMQ6 1270 aa5.54□□□□□ -1.52
SF3B1-212ENST00000496458 DPPA4Q7L190 304 aa5.54□□□□□ -1.52
SF3B1-212ENST00000496458 GSTA5Q7RTV2 222 aa5.54□□□□□ -1.52
SF3B1-212ENST00000496458 R3HCC1LQ7Z5L2 792 aaKnown RBP5.54□□□□□ -1.52
SF3B1-212ENST00000496458 DSG4Q86SJ6 1040 aa5.54□□□□□ -1.52
SF3B1-212ENST00000496458 MAF1Q9H063 256 aa5.54□□□□□ -1.52
SF3B1-212ENST00000496458 FAM237AA0A1B0GTK4 181 aa5.53□□□□□ -1.52
SF3B1-212ENST00000496458 ASPDHA6ND91 283 aa5.53□□□□□ -1.52
SF3B1-212ENST00000496458 NPIPB15A6NHN6 443 aaPredicted RBP5.53□□□□□ -1.52
SF3B1-212ENST00000496458 TGFB1I1O43294 461 aa5.53□□□□□ -1.52
SF3B1-212ENST00000496458 SEC14L2O76054 403 aa5.53□□□□□ -1.52
SF3B1-212ENST00000496458 NKX2-2O95096 273 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms