RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 TRIM63Q969Q1 353 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 ZBED3Q96IU2 234 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 ADI1Q9BV57 179 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 FBXW11Q9UKB1 542 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 PHF24Q9UPV7 400 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 KPNA3O00505 521 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 SNPHO15079 494 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 ALOX5P09917 674 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 IFNA8P32881 189 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 DSC2Q02487 901 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 TNK2Q07912 1038 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 SIX1Q15475 284 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 NCCRP1Q6ZVX7 275 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 IFNL1Q8IU54 200 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 RAB42Q8N4Z0 105 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 GRIN3AQ8TCU5 1115 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 NFKBIZQ9BYH8 718 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 VWA7Q9Y334 891 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 TKTP29401 623 aaKnown RBP16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 MYLK3Q32MK0 819 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 POM121L1PQ3SYA9 428 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 SLC9A4Q6AI14 798 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 C15orf39Q6ZRI6 1047 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 SVOPQ8N4V2 548 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 OR2T34Q8NGX1 318 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 OR2T3Q8NH03 318 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 ZFP28Q8NHY6 868 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 STAG3L4Q8TBR4 150 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 EMID1Q96A84 441 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 TBCDQ9BTW9 1192 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 WDR12Q9GZL7 423 aaKnown RBP16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 PCDH12Q9NPG4 1184 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 RAD54BQ9Y620 910 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 C10orf71Q711Q0 1435 aa16.29■□□□□ 0.2
CCDC88B-209ENST00000494080 MAGEB3O15480 346 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 PAX3P23760 479 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 HSPA14Q0VDF9 509 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 TLR1Q15399 786 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 OSTM1Q86WC4 334 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 CNTD1Q8N815 330 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 AGO1Q9UL18 857 aaKnown RBP16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 BTBD3Q9Y2F9 522 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 FAM32AQ9Y421 112 aaKnown RBP16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 CA12O43570 354 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 TBX18O95935 607 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 F7P08709 466 aaPredicted RBP16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 SELPP16109 830 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 SOAT1P35610 550 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 TPTEP56180 551 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 MPP1Q00013 466 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 GRM3Q14832 879 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 ESRP1Q6NXG1 681 aaKnown RBP16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 KCTD8Q6ZWB6 473 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 FBXO27Q8NI29 283 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 PEBP4Q96S96 227 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 AGAP2Q99490 1192 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 GBA3Q9H227 469 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 ARMC7Q9H6L4 198 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 FANCEQ9HB96 536 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 GTF2IRD1Q9UHL9 959 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 LAMA4Q16363 1823 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 MYO5AQ9Y4I1 1855 aaKnown RBP16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 SEPHS1P49903 392 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 DLG2Q15700 870 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 PGS1Q32NB8 556 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 PITRM1Q5JRX3 1037 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 STXBP5Q5T5C0 1151 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 WDTC1Q8N5D0 677 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 OR56A4Q8NGH8 313 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 CACNA2D2Q9NY47 1150 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 BTAF1O14981 1849 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 A0A0J9YVX5 310 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 CLDN25C9JDP6 229 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 TK2O00142 265 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 DBTP11182 482 aaKnown RBP16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 LBPP18428 481 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 STARD3Q14849 445 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 MILR1Q7Z6M3 343 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 AKAP14Q86UN6 197 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 FAM120BQ96EK7 910 aaKnown RBP16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 OR52B2Q96RD2 323 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 UGT2B28Q9BY64 529 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 UNC93B1Q9H1C4 597 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 ZDHHC6Q9H6R6 413 aa16.28■□□□□ 0.2
CCDC88B-209ENST00000494080 C9IYK1 514 aa16.27■□□□□ 0.2
CCDC88B-209ENST00000494080 TOR1BO14657 336 aa16.27■□□□□ 0.2
CCDC88B-209ENST00000494080 NMBRP28336 390 aa16.27■□□□□ 0.2
CCDC88B-209ENST00000494080 SERPINA4P29622 427 aa16.27■□□□□ 0.2
CCDC88B-209ENST00000494080 GJA9P57773 515 aa16.27■□□□□ 0.2
CCDC88B-209ENST00000494080 ZC3H12BQ5HYM0 836 aaKnown RBP16.27■□□□□ 0.2
CCDC88B-209ENST00000494080 MRPL57Q9BQC6 102 aaKnown RBP16.27■□□□□ 0.2
CCDC88B-209ENST00000494080 HERPUD2Q9BSE4 406 aa16.27■□□□□ 0.2
CCDC88B-209ENST00000494080 DKK3Q9UBP4 350 aa16.27■□□□□ 0.2
CCDC88B-209ENST00000494080 C5orf58C9J3I9 102 aa16.27■□□□□ 0.2
CCDC88B-209ENST00000494080 FKTNO75072 461 aa16.27■□□□□ 0.2
CCDC88B-209ENST00000494080 CDK9P50750 372 aaKnown RBP16.27■□□□□ 0.2
CCDC88B-209ENST00000494080 FUT10Q6P4F1 479 aa16.27■□□□□ 0.2
CCDC88B-209ENST00000494080 CDHR3Q6ZTQ4 885 aa16.27■□□□□ 0.2
CCDC88B-209ENST00000494080 TMEM26Q6ZUK4 368 aa16.27■□□□□ 0.2
CCDC88B-209ENST00000494080 SETD9Q8NE22 299 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms