RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 BAG5Q9UL15 447 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 SLC12A4Q9UP95 1085 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 EXOC7Q9UPT5 735 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 ZNF518AQ6AHZ1 1483 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 MAGI2Q86UL8 1455 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 SPAG9O60271 1321 aaKnown RBP3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 ADAMTSL3P82987 1691 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 ZFYVE16Q7Z3T8 1539 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 A0A1W2PR77 199 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 NPIPB13A6NJU9 1138 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 NPIPB5A8MRT5 1133 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 NPIPB4C9JG80 1138 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 SEPT4O43236 478 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 USP12O75317 370 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 NME6O75414 186 aaPredicted RBP3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 REC8O95072 547 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 PTBP3O95758 552 aaKnown RBP3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 FGBP02675 491 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 PTPN9P43378 593 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 MTHFSP49914 203 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 LIG4P49917 911 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 PLCD1P51178 756 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 CSE1LP55060 971 aaKnown RBP3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 TPD52P55327 224 aaPredicted RBP3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 ARHGAP8P85298 464 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 HTD2P86397 168 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 CDK18Q07002 472 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 GRAPQ13588 217 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 LAMB3Q13751 1172 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 CLCA4Q14CN2 919 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 TNIP1Q15025 636 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 AP5B1Q2VPB7 878 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 LETM2Q2VYF4 491 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 HIST2H2BCQ6DN03 193 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 HIST2H2BDQ6DRA6 164 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 KIAA1161Q6NSJ0 714 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 TMEM65Q6PI78 240 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 TMEM270Q6UE05 265 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 KDELC1Q6UW63 502 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 GBP6Q6ZN66 633 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 RBPMS2Q6ZRY4 209 aaKnown RBP3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 CCDC186Q7Z3E2 898 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 IRF2BP2Q7Z5L9 587 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 LURAP1LQ8IV03 231 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 SIX6OS1Q8N1H7 587 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 DPP10Q8N608 796 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 PI4KAP1Q8N8J0 262 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 SYT2Q8N9I0 419 aaPredicted RBP3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 ZFAND2BQ8WV99 257 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 MAP4K1Q92918 833 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 COQ8BQ96D53 544 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 WDYHV1Q96HA8 205 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 CCDC43Q96MW1 224 aaKnown RBP3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 TTC12Q9H892 705 aaPredicted RBP3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 MRPL44Q9H9J2 332 aaKnown RBP3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 INTS10Q9NVR2 710 aaKnown RBP3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 THAP1Q9NVV9 213 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 PPP1R14DQ9NXH3 145 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 ALKBH4Q9NXW9 302 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 ACTR3BQ9P1U1 418 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 MARCH4Q9P2E8 410 aaPredicted RBP3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 TUBE1Q9UJT0 475 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 PCDHB2Q9Y5E7 798 aa3.26□□□□□ -1.89
DEPDC1-204ENST00000489862 ARHGEF40Q8TER5 1519 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 COL15A1P39059 1388 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 INO80Q9ULG1 1556 aaPredicted RBP3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 RTEL1-TNFRSF6BF6WH68 1400 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 PLEKHH2Q8IVE3 1493 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 LOC102723996A0A087X1L8 192 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 TRBC2A0A5B9 178 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 ENO4A6NNW6 628 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 KCNJ18B7U540 433 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 PSMD14O00487 310 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 SOCS2O14508 198 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 PLRG1O43660 514 aaKnown RBP3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 COX7A2P14406 83 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 CCNA2P20248 432 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 SAT1P21673 171 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 RPA1P27694 616 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 RBL1P28749 1068 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 PEX19P40855 299 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 PIP4K2AP48426 406 aaPredicted RBP3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 GATMP50440 423 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 STAT2P52630 851 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 NME5P56597 212 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 RBM6P78332 1123 aaKnown RBP3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 TIAL1Q01085 375 aaKnown RBP eCLIP3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 AKAP17AQ02040 695 aaKnown RBP3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 GHRHRQ02643 423 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 DEUP1Q05D60 604 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 TRA2AQ13595 282 aaKnown RBP eCLIP3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 ALCAMQ13740 583 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 PTK6Q13882 451 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 CAPSQ13938 189 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 KCNJ12Q14500 433 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 CRYMQ14894 314 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 LARS2Q15031 903 aaKnown RBP3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 ACOX1Q15067 660 aa3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 RBMS2Q15434 407 aaKnown RBP3.25□□□□□ -1.89
DEPDC1-204ENST00000489862 IGSF11Q5DX21 431 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 103.9 ms