RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 TYSND1Q2T9J0 566 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 CARD16Q5EG05 197 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 ZNF789Q5FWF6 425 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 MRNIPQ6NTE8 343 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 SERPINA13PQ6UXR4 307 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 DPY19L3Q6ZPD9 716 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 FAM47EQ6ZV65 393 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 SLC41A1Q8IVJ1 513 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 TRIM42Q8IWZ5 723 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 GJD3Q8N144 294 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 RYBPQ8N488 228 aaPredicted RBP14.17□□□□□ -0.14
CUX1-209ENST00000487284 OTUD6BQ8N6M0 293 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 CCDC197Q8NCU1 140 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 OR4K2Q8NGD2 314 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 OR2A12Q8NGT7 310 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 OR4L1Q8NH43 312 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 RAB3IL1Q8TBN0 382 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 NECAB3Q96P71 396 aaPredicted RBP14.17□□□□□ -0.14
CUX1-209ENST00000487284 C19orf43Q9BQ61 176 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 PITPNM3Q9BZ71 974 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 TMEM245Q9H330 911 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 SLCO1B3Q9NPD5 702 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 CATSPERZQ9NTU4 200 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 POLR3BQ9NW08 1133 aaPredicted RBP14.17□□□□□ -0.14
CUX1-209ENST00000487284 TMEM216Q9P0N5 145 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 HECAQ9UBI9 543 aaPredicted RBP14.17□□□□□ -0.14
CUX1-209ENST00000487284 MUTYHQ9UIF7 546 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 PHTF1Q9UMS5 762 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 NDRG2Q9UN36 371 aaKnown RBP14.17□□□□□ -0.14
CUX1-209ENST00000487284 SLC8A2Q9UPR5 921 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 ZNF711Q9Y462 761 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 CKAP5Q14008 2032 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 NCOR1O75376 2440 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 BDP1A6H8Y1 2624 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 BPTFQ12830 3046 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 KRBA1A5PL33 1030 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 BPGMP07738 259 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 SLC35E2BP0CK96 405 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 COL6A2P12110 1019 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 HNRNPLP14866 589 aaKnown RBP eCLIP14.17□□□□□ -0.14
CUX1-209ENST00000487284 STMN1P16949 149 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 GMPRP36959 345 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 ABL2P42684 1182 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 WASP42768 502 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 TAS2R39P59534 338 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 IRF9Q00978 393 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 CCINQ13939 588 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 ITIH4Q14624 930 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 MYLK3Q32MK0 819 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 HNRNPA1L2Q32P51 320 aaKnown RBP14.17□□□□□ -0.14
CUX1-209ENST00000487284 CCDC153Q494R4 210 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 TAF1BQ53T94 588 aaPredicted RBP14.17□□□□□ -0.14
CUX1-209ENST00000487284 C2orf27AQ580R0 203 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 AFTPHQ6ULP2 937 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 PLPP6Q8IY26 295 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 CHPFQ8IZ52 775 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 PLD6Q8N2A8 252 aaKnown RBP14.17□□□□□ -0.14
CUX1-209ENST00000487284 CHST14Q8NCH0 376 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 ECHDC3Q96DC8 303 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 C1QTNF1Q9BXJ1 281 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 CPEB1Q9BZB8 566 aaKnown RBP14.17□□□□□ -0.14
CUX1-209ENST00000487284 WNT16Q9UBV4 365 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 FBXL21Q9UKT6 434 aa14.17□□□□□ -0.14
CUX1-209ENST00000487284 CORO1CQ9ULV4 474 aaPredicted RBP14.17□□□□□ -0.14
CUX1-209ENST00000487284 A0A0J9YYE9 177 aa14.16□□□□□ -0.14
CUX1-209ENST00000487284 H7C0S8 307 aa14.16□□□□□ -0.14
CUX1-209ENST00000487284 MAN2B1O00754 1011 aa14.16□□□□□ -0.14
CUX1-209ENST00000487284 PHGDHO43175 533 aaKnown RBP14.16□□□□□ -0.14
CUX1-209ENST00000487284 TRBC1P01850 177 aa14.16□□□□□ -0.14
CUX1-209ENST00000487284 BGNP21810 368 aa14.16□□□□□ -0.14
CUX1-209ENST00000487284 CRABP2P29373 138 aa14.16□□□□□ -0.14
CUX1-209ENST00000487284 HNRNPH2P55795 449 aaKnown RBP14.16□□□□□ -0.14
CUX1-209ENST00000487284 PRKCQQ04759 706 aa14.16□□□□□ -0.14
CUX1-209ENST00000487284 SEMA3AQ14563 771 aa14.16□□□□□ -0.14
CUX1-209ENST00000487284 GLIPR1L2Q4G1C9 344 aa14.16□□□□□ -0.14
CUX1-209ENST00000487284 RBM20Q5T481 1227 aaKnown RBP14.16□□□□□ -0.14
CUX1-209ENST00000487284 C16orf46Q6P387 395 aa14.16□□□□□ -0.14
CUX1-209ENST00000487284 C6orf89Q6UWU4 347 aa14.16□□□□□ -0.14
CUX1-209ENST00000487284 SPATA21Q7Z572 469 aa14.16□□□□□ -0.14
CUX1-209ENST00000487284 CEP97Q8IW35 865 aa14.16□□□□□ -0.14
CUX1-209ENST00000487284 ELMO2Q96JJ3 720 aa14.16□□□□□ -0.14
CUX1-209ENST00000487284 OMDQ99983 421 aa14.16□□□□□ -0.14
CUX1-209ENST00000487284 MECRQ9BV79 373 aa14.16□□□□□ -0.14
CUX1-209ENST00000487284 ZDHHC6Q9H6R6 413 aa14.16□□□□□ -0.14
CUX1-209ENST00000487284 IL17CQ9P0M4 197 aa14.16□□□□□ -0.14
CUX1-209ENST00000487284 TLK1Q9UKI8 766 aa14.16□□□□□ -0.14
CUX1-209ENST00000487284 STON1Q9Y6Q2 735 aa14.16□□□□□ -0.14
CUX1-209ENST00000487284 PLXNA2O75051 1894 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 EDDM13A0A1B0GTR0 161 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 CAPN8A6NHC0 703 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 STX7O15400 261 aaKnown RBP14.15□□□□□ -0.14
CUX1-209ENST00000487284 POP4O95707 220 aaKnown RBP14.15□□□□□ -0.14
CUX1-209ENST00000487284 EPHX1P07099 455 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 CTPS1P17812 591 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 RECQLP46063 649 aaPredicted RBP14.15□□□□□ -0.14
CUX1-209ENST00000487284 STC1P52823 247 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 ENPP2Q13822 863 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 PCLAFQ15004 111 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 PTPRRQ15256 657 aa14.15□□□□□ -0.14
CUX1-209ENST00000487284 ZNF852Q6ZMS4 543 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms