RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-205	ENST00000486941	CACNA1G	O43497	2377 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	FAM90A10P	A6NDY2	464 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941		I3L4J1	428 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	PODXL	O00592	558 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	PRRG1	O14668	218 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	GCAT	O75600	419 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	SEC24A	O95486	1093 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	OR52Z1	P0C646	297 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	TMEM191B	P0C7N4	346 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	KIT	P10721	976 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	MCF2	P10911	925 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	CEBPB	P17676	345 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	TNFRSF1B	P20333	461 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	FCAR	P24071	287 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	CXCL12	P48061	93 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	TRAPPC10	P48553	1259 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	HTR6	P50406	440 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	CCR3	P51677	355 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	BCAT1	P54687	386 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	FGL2	Q14314	439 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	LARS2	Q15031	903 aa	Known RBP	4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	SAFB	Q15424	915 aa	Known RBP eCLIP	4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	GLRA4	Q5JXX5	417 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	HAUS3	Q68CZ6	603 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	C1orf228	Q6PIY5	440 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	TSSK4	Q6SA08	328 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	DEF8	Q6ZN54	512 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	PTCHD4	Q6ZW05	846 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	MFSD6L	Q8IWD5	586 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	PELI3	Q8N2H9	469 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	ELMOD1	Q8N336	334 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	NECAB1	Q8N987	351 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	APPL2	Q8NEU8	664 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	OR56A3	Q8NH54	315 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	DEPDC1B	Q8WUY9	529 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	KBTBD7	Q8WVZ9	684 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	FAM3C	Q92520	227 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	SMARCD2	Q92925	531 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	TCEAL4	Q96EI5	215 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	MSANTD3	Q96H12	275 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	ZBTB45	Q96K62	511 aa	Predicted RBP	4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	ZMAT2	Q96NC0	199 aa	Known RBP	4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	ACO2	Q99798	780 aa	Known RBP	4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	NTPCR	Q9BSD7	190 aa	Known RBP	4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	KIFC3	Q9BVG8	833 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	CDT1	Q9H211	546 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	C17orf75	Q9HAS0	396 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	LMAN1L	Q9HAT1	526 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	TRPV4	Q9HBA0	871 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	POLD4	Q9HCU8	107 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	ZNF334	Q9HCZ1	680 aa	Predicted RBP	4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	MLXIPL	Q9NP71	852 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	PIH1D1	Q9NWS0	290 aa	Known RBP	4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	LRWD1	Q9UFC0	647 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	AFF4	Q9UHB7	1163 aa	Known RBP	4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	FBXL5	Q9UKA1	691 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	GMEB2	Q9UKD1	530 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	RAB23	Q9ULC3	237 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	NDRG2	Q9UN36	371 aa	Known RBP	4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	INSL5	Q9Y5Q6	135 aa		4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	NUP210	Q8TEM1	1887 aa	Predicted RBP	4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	KIF26A	Q9ULI4	1882 aa	Predicted RBP	4.26	□□□□□ -1.73
SNRNP40-205	ENST00000486941	CHD6	Q8TD26	2715 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	GON4L	Q3T8J9	2241 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	CCDC169	A6NNP5	214 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	PRR23D1	E9PI22	279 aa	Predicted RBP	4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941		M0QZQ0	153 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	SLC30A4	O14863	429 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	ZNF263	O14978	683 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	CHAD	O15335	359 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	AP1G1	O43747	822 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	JAK2	O60674	1132 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	EIF5B	O60841	1220 aa	Known RBP	4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	OAZ2	O95190	189 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	PAPSS2	O95340	614 aa	Predicted RBP	4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	LARGE1	O95461	756 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	RET	P07949	1114 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	PRR23D2	P0DMB1	279 aa	Predicted RBP	4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	CHRNB1	P11230	501 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	PSG1	P11464	419 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	HTR1B	P28222	390 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	MARCKS	P29966	332 aa	Predicted RBP	4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	GDI1	P31150	447 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	HOXA6	P31267	233 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	UQCRC1	P31930	480 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	SCN1A	P35498	2009 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	CCT6A	P40227	531 aa	Known RBP	4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	CCR2	P41597	374 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	PRKAG1	P54619	331 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	ARPP19	P56211	112 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	PEX3	P56589	373 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	OSTN	P61366	133 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	YPEL5	P62699	121 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	DEUP1	Q05D60	604 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	FCHO2	Q0JRZ9	810 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	TWF1	Q12792	350 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	DMP1	Q13316	513 aa	Predicted RBP	4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	CTXN3	Q4LDR2	81 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	DGKK	Q5KSL6	1271 aa		4.25	□□□□□ -1.73
SNRNP40-205	ENST00000486941	DCAF12L1	Q5VU92	463 aa		4.25	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms