RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	ARMC7	Q9H6L4	198 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	IFT22	Q9H7X7	185 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	XAB2	Q9HCS7	855 aa	Known RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	C6orf50	Q9HD87	102 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	SAYSD1	Q9NPB0	183 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	AKIP1	Q9NQ31	210 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	NECTIN3	Q9NQS3	549 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	HOMER2	Q9NSB8	354 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	C20orf96	Q9NUD7	363 aa	Predicted RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	SEPT11	Q9NVA2	429 aa	Known RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	SLC39A1	Q9NY26	324 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	DDX56	Q9NY93	547 aa	Known RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	MBD2	Q9UBB5	411 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	ZNF70	Q9UC06	446 aa	Predicted RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	ATP6V1H	Q9UI12	483 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	ENPP5	Q9UJA9	477 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	ZNF221	Q9UK13	617 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	POU2F3	Q9UKI9	436 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	PCDHA6	Q9UN73	950 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	PTPN22	Q9Y2R2	807 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	TMA7	Q9Y2S6	64 aa	Known RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	SF3B6	Q9Y3B4	125 aa	Known RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	RNF11	Q9Y3C5	154 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	PCDHGB3	Q9Y5G1	929 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	PPP2R3B	Q9Y5P8	575 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	CDY2A	Q9Y6F7	541 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	CDY1	Q9Y6F8	540 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	LAMB1	P07942	1786 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	WDR90	Q96KV7	1748 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	ZNF646	O15015	1829 aa	Predicted RBP	4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	PNMA8C	A0A1B0GUJ8	204 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	FAM237B	A0A1B0GVD1	139 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	WDR91	A4D1P6	747 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	NPEPPSL1	A6NEC2	478 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	PRR23A	A6NEV1	266 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	GSG1L2	A8MUP6	293 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	ANKRD63	C9JTQ0	380 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520		F5H6K3	240 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520		H0YAE9	185 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	PSMD11	O00231	422 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	TRIM38	O00635	465 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	EIF3D	O15371	548 aa	Known RBP eCLIP	4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	NCAM2	O15394	837 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	HOXC11	O43248	304 aa	Predicted RBP	4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	PAPSS1	O43252	624 aa	Predicted RBP	4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	AKAP10	O43572	662 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	TMCC2	O75069	709 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	ENTPD3	O75355	529 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	TRIM3	O75382	744 aa	Predicted RBP	4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	MAF	O75444	373 aa	Predicted RBP	4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	TADA2A	O75478	443 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	SERPINI2	O75830	405 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	SEC14L2	O76054	403 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	WDPCP	O95876	746 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	ASS1	P00966	412 aa	Known RBP	4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	PRL	P01236	227 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	CD4	P01730	458 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	FTL	P02792	175 aa	Predicted RBP	4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	JUN	P05412	331 aa	Known RBP	4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	HLA-DOA	P06340	250 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	YES1	P07947	543 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	INHBA	P08476	426 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	TFPT	P0C1Z6	253 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	MBL2	P11226	248 aa	Predicted RBP	4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	CDH1	P12830	882 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	HOXB6	P17509	224 aa	Known RBP	4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	PRKACA	P17612	351 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	DDX5	P17844	614 aa	Known RBP	4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	ATF6	P18850	670 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	NR2F2	P24468	414 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	KLRC2	P26717	231 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	CCND2	P30279	289 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	SLC7A1	P30825	629 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	PTPN7	P35236	360 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	PSMC2	P35998	433 aa	Known RBP	4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	TRIM23	P36406	574 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	ZNF76	P36508	570 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	HPCAL1	P37235	193 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	DDOST	P39656	456 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	GNPDA1	P46926	289 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	SLC9A3	P48764	834 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	EPHB1	P54762	984 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	AQP5	P55064	265 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	MLLT6	P55198	1093 aa	Predicted RBP	4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	ITGA1	P56199	1179 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	RHD	Q02161	417 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	TNFAIP2	Q03169	654 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	RUNX1T1	Q06455	604 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	ENPEP	Q07075	957 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	OVGP1	Q12889	678 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	EPS8	Q12929	822 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	TRAF2	Q12933	501 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	PDIA2	Q13087	525 aa	Known RBP	4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	GRM1	Q13255	1194 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	GRB10	Q13322	594 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	PPP2R5D	Q14738	602 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	POU6F1	Q14863	301 aa		4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	DRAP1	Q14919	205 aa	Predicted RBP	4.72	□□□□□ -1.65
PTCD3-212	ENST00000477520	ACAP2	Q15057	778 aa		4.72	□□□□□ -1.65

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