RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 SCINQ9Y6U3 715 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 SHROOM3Q8TF72 1996 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 KNTC1P50748 2209 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 USP24Q9UPU5 2620 aa6.89□□□□□ -1.31
CCDC88A-213ENST00000476903 FREM2Q5SZK8 3169 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 AKAP13Q12802 2813 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 A0A1W2PQJ5 194 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 SHISA3A0PJX4 238 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 TMEM191CA6NGB0 347 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 A6NNZ2 444 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 RASA4BC9J798 803 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 GOLGA6L19H0YKK7 550 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 DDX3XO00571 662 aaKnown RBP eCLIP6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 NEMP1O14524 444 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 RASA4O43374 803 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 TSPAN6O43657 245 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 KRT37O76014 449 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 TMCC1O94876 653 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 POP4O95707 220 aaKnown RBP6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 LDOC1O95751 146 aaPredicted RBP6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 IGSF6O95976 241 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 THEGLP0DJG4 465 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 NDST2P52849 883 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 UBASH3AP57075 661 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 RHOAP61586 193 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 FANCCQ00597 558 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 OGDHQ02218 1023 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 RAD51Q06609 339 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 SERINC3Q13530 473 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 NR1I3Q14994 352 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 ZXDCQ2QGD7 858 aaPredicted RBP6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 MYLK3Q32MK0 819 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 INO80DQ53TQ3 878 aaPredicted RBP6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 ERMARDQ5T6L9 678 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 E4F1Q66K89 784 aaPredicted RBP6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 SEL1L3Q68CR1 1132 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 CCNI2Q6ZMN8 369 aaPredicted RBP6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 LEKR1Q6ZMV7 388 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 PARS2Q7L3T8 475 aaKnown RBP6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 LUZP1Q86V48 1076 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 VPS36Q86VN1 386 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 UMODL1-AS1Q8N2C9 162 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 GALNT15Q8N3T1 639 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 EID2Q8N6I1 236 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 ZCCHC14Q8WYQ9 949 aaKnown RBP6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 KLK6Q92876 244 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 ZNF653Q96CK0 615 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 ARHGEF26Q96DR7 871 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 IQCDQ96DY2 449 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 HMCESQ96FZ2 354 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 CNDP2Q96KP4 475 aaKnown RBP6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 MYOCQ99972 504 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 NCAPGQ9BPX3 1015 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 TTYH3Q9C0H2 523 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 DHX35Q9H5Z1 703 aaKnown RBP6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 NOL6Q9H6R4 1146 aaKnown RBP6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 MRPL47Q9HD33 250 aaKnown RBP6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 FZD3Q9NPG1 666 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 CNOT8Q9UFF9 292 aaKnown RBP6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 ZFR2Q9UPR6 939 aaKnown RBP6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 CA5BQ9Y2D0 317 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 PCDHGA1Q9Y5H4 931 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 BZW2Q9Y6E2 419 aaKnown RBP6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 WDFY3Q8IZQ1 3526 aa6.88□□□□□ -1.31
CCDC88A-213ENST00000476903 CFAP47Q6ZTR5 3102 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 DMXL2Q8TDJ6 3036 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 ARHGAP42A6NI28 874 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 C16orf96A6NNT2 1141 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 EEF2KO00418 725 aaKnown RBP6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 DAPK3O43293 454 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 PRPSAP2O60256 369 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 RFPL3O75679 317 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 UGT2B4P06133 528 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 CDK4P11802 303 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 SKILP12757 684 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 MIPP30301 263 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 GKP32189 559 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 VIPR1P32241 457 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 ZNF135P52742 658 aaPredicted RBP6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 CLDN2P57739 230 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 RPS26P62854 115 aaKnown RBP6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 YBX1P67809 324 aaKnown RBP6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 SGCGQ13326 291 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 GRM3Q14832 879 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 ACAP1Q15027 740 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 HS1BP3Q53T59 392 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 CCDC157Q569K6 752 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 TDRD12Q587J7 1177 aaKnown RBP6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 ATXN7L2Q5T6C5 722 aaPredicted RBP6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 GDPD4Q6W3E5 623 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 KYAT3Q6YP21 454 aaKnown RBP6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 GCNT7Q6ZNI0 430 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 Q6ZSR6 202 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 RFX8Q6ZV50 586 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 PTAR1Q7Z6K3 402 aaPredicted RBP6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 ABI3BPQ7Z7G0 1075 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 DNAAF5Q86Y56 855 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 DCP2Q8IU60 420 aaKnown RBP6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 PSTKQ8IV42 348 aaKnown RBP6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 TP53I13Q8NBR0 393 aaPredicted RBP6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms