RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 TSR1Q2NL82 804 aaKnown RBP18.5■□□□□ 0.55
COL7A1-209ENST00000474432 LRRC38Q5VT99 294 aa18.5■□□□□ 0.55
COL7A1-209ENST00000474432 NPNTQ6UXI9 565 aa18.5■□□□□ 0.55
COL7A1-209ENST00000474432 ZNF765Q7L2R6 523 aa18.5■□□□□ 0.55
COL7A1-209ENST00000474432 RHOT2Q8IXI1 618 aa18.5■□□□□ 0.55
COL7A1-209ENST00000474432 CCNYQ8ND76 341 aa18.5■□□□□ 0.55
COL7A1-209ENST00000474432 WDR36Q8NI36 951 aaKnown RBP18.5■□□□□ 0.55
COL7A1-209ENST00000474432 AP2M1Q96CW1 435 aa18.5■□□□□ 0.55
COL7A1-209ENST00000474432 NAF1Q96HR8 494 aaKnown RBP18.5■□□□□ 0.55
COL7A1-209ENST00000474432 OLFM3Q96PB7 478 aa18.5■□□□□ 0.55
COL7A1-209ENST00000474432 GFM1Q96RP9 751 aaKnown RBP18.5■□□□□ 0.55
COL7A1-209ENST00000474432 FOXP3Q9BZS1 431 aa18.5■□□□□ 0.55
COL7A1-209ENST00000474432 DPEP2Q9H4A9 486 aa18.5■□□□□ 0.55
COL7A1-209ENST00000474432 SYNDIG1Q9H7V2 258 aa18.5■□□□□ 0.55
COL7A1-209ENST00000474432 PCDH9Q9HC56 1237 aa18.5■□□□□ 0.55
COL7A1-209ENST00000474432 CNOT6Q9ULM6 557 aaKnown RBP18.5■□□□□ 0.55
COL7A1-209ENST00000474432 HYOU1Q9Y4L1 999 aa18.5■□□□□ 0.55
COL7A1-209ENST00000474432 TTLL3Q9Y4R7 772 aa18.5■□□□□ 0.55
COL7A1-209ENST00000474432 PCYT1BQ9Y5K3 369 aaPredicted RBP18.5■□□□□ 0.55
COL7A1-209ENST00000474432 CCDC187A0A096LP49 1063 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 B4GAT1O43505 415 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 CLDN7O95471 211 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 ZNF30P17039 623 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 ADCY8P40145 1251 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 GPR1P46091 355 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 GNPDA1P46926 289 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 MAZP56270 477 aaKnown RBP18.49■□□□□ 0.55
COL7A1-209ENST00000474432 RPL26P61254 145 aaKnown RBP18.49■□□□□ 0.55
COL7A1-209ENST00000474432 B4GALNT1Q00973 533 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 CTBSQ01459 385 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 TAZQ16635 292 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 ZNF438Q7Z4V0 828 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 SPRED1Q7Z699 444 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 CLEC14AQ86T13 490 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 TRIM74Q86UV6 250 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 CCNJLQ8IV13 435 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 Q8N9G6 341 aaPredicted RBP18.49■□□□□ 0.55
COL7A1-209ENST00000474432 LPCAT1Q8NF37 534 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 EID2BQ96D98 161 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 COX14Q96I36 57 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 RIOK2Q9BVS4 552 aaKnown RBP18.49■□□□□ 0.55
COL7A1-209ENST00000474432 SUDS3Q9H7L9 328 aaPredicted RBP18.49■□□□□ 0.55
COL7A1-209ENST00000474432 THSD1Q9NS62 852 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 TAAR2Q9P1P5 351 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 LRIT1Q9P2V4 623 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 ATXN7L1Q9ULK2 861 aaPredicted RBP18.49■□□□□ 0.55
COL7A1-209ENST00000474432 RPL26L1Q9UNX3 145 aaKnown RBP18.49■□□□□ 0.55
COL7A1-209ENST00000474432 TMEM98Q9Y2Y6 226 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 HEY1Q9Y5J3 304 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 BAHCC1Q9P281 2608 aa18.49■□□□□ 0.55
COL7A1-209ENST00000474432 GOLGA6CA6NDK9 693 aa18.48■□□□□ 0.55
COL7A1-209ENST00000474432 GOLGA6BA6NDN3 693 aa18.48■□□□□ 0.55
COL7A1-209ENST00000474432 NUDT21O43809 227 aaKnown RBP18.48■□□□□ 0.55
COL7A1-209ENST00000474432 GOLGA6DP0CG33 693 aa18.48■□□□□ 0.55
COL7A1-209ENST00000474432 CCKBRP32239 447 aa18.48■□□□□ 0.55
COL7A1-209ENST00000474432 CD86P42081 329 aa18.48■□□□□ 0.55
COL7A1-209ENST00000474432 EPHB1P54762 984 aa18.48■□□□□ 0.55
COL7A1-209ENST00000474432 ZFP36L1Q07352 338 aaKnown RBP18.48■□□□□ 0.55
COL7A1-209ENST00000474432 COL9A2Q14055 689 aaPredicted RBP18.48■□□□□ 0.55
COL7A1-209ENST00000474432 ZFYVE27Q5T4F4 411 aa18.48■□□□□ 0.55
COL7A1-209ENST00000474432 B4GALNT4Q76KP1 1039 aa18.48■□□□□ 0.55
COL7A1-209ENST00000474432 NAGSQ8N159 534 aa18.48■□□□□ 0.55
COL7A1-209ENST00000474432 NDUFAF2Q8N183 169 aa18.48■□□□□ 0.55
COL7A1-209ENST00000474432 TC2NQ8N9U0 490 aa18.48■□□□□ 0.55
COL7A1-209ENST00000474432 PATE1Q8WXA2 126 aa18.48■□□□□ 0.55
COL7A1-209ENST00000474432 RNF25Q96BH1 459 aaPredicted RBP18.48■□□□□ 0.55
COL7A1-209ENST00000474432 TADA1Q96BN2 335 aa18.48■□□□□ 0.55
COL7A1-209ENST00000474432 FCRL3Q96P31 734 aaPredicted RBP18.48■□□□□ 0.55
COL7A1-209ENST00000474432 TRIB3Q96RU7 358 aa18.48■□□□□ 0.55
COL7A1-209ENST00000474432 CEP41Q9BYV8 373 aa18.48■□□□□ 0.55
COL7A1-209ENST00000474432 GOLGA6AQ9NYA3 693 aa18.48■□□□□ 0.55
COL7A1-209ENST00000474432 INTUQ9ULD6 942 aa18.48■□□□□ 0.55
COL7A1-209ENST00000474432 AHCTF1Q8WYP5 2266 aa18.47■□□□□ 0.55
COL7A1-209ENST00000474432 ANKRD66B4E2M5 251 aa18.47■□□□□ 0.55
COL7A1-209ENST00000474432 AKR1B15C9JRZ8 316 aaPredicted RBP18.47■□□□□ 0.55
COL7A1-209ENST00000474432 TNFSF15O95150 251 aa18.47■□□□□ 0.55
COL7A1-209ENST00000474432 KRT1P04264 644 aa18.47■□□□□ 0.55
COL7A1-209ENST00000474432 KRT10P13645 584 aa18.47■□□□□ 0.55
COL7A1-209ENST00000474432 RBMS1P29558 406 aaKnown RBP18.47■□□□□ 0.55
COL7A1-209ENST00000474432 INHBCP55103 352 aa18.47■□□□□ 0.55
COL7A1-209ENST00000474432 ILF3Q12906 894 aaKnown RBP eCLIP18.47■□□□□ 0.55
COL7A1-209ENST00000474432 NR1D2Q14995 579 aa18.47■□□□□ 0.55
COL7A1-209ENST00000474432 PYCR3Q53H96 274 aa18.47■□□□□ 0.55
COL7A1-209ENST00000474432 DOK6Q6PKX4 331 aa18.47■□□□□ 0.55
COL7A1-209ENST00000474432 SARM1Q6SZW1 724 aa18.47■□□□□ 0.55
COL7A1-209ENST00000474432 PCSK4Q6UW60 755 aa18.47■□□□□ 0.55
COL7A1-209ENST00000474432 MFSD7Q6UXD7 560 aa18.47■□□□□ 0.55
COL7A1-209ENST00000474432 CNGA4Q8IV77 575 aa18.47■□□□□ 0.55
COL7A1-209ENST00000474432 SLITRK4Q8IW52 837 aa18.47■□□□□ 0.55
COL7A1-209ENST00000474432 RAVER1Q8IY67 606 aaKnown RBP18.47■□□□□ 0.55
COL7A1-209ENST00000474432 NRSN1Q8IZ57 195 aa18.47■□□□□ 0.55
COL7A1-209ENST00000474432 ARL14Q8N4G2 192 aa18.47■□□□□ 0.55
COL7A1-209ENST00000474432 ZDHHC1Q8WTX9 485 aa18.47■□□□□ 0.55
COL7A1-209ENST00000474432 IMP4Q96G21 291 aaKnown RBP18.47■□□□□ 0.55
COL7A1-209ENST00000474432 GSDMCQ9BYG8 508 aa18.47■□□□□ 0.55
COL7A1-209ENST00000474432 EPB41L5Q9HCM4 733 aa18.47■□□□□ 0.55
COL7A1-209ENST00000474432 OAS3Q9Y6K5 1087 aaKnown RBP18.47■□□□□ 0.55
COL7A1-209ENST00000474432 FADS2P1A8MWK0 482 aa18.46■□□□□ 0.55
COL7A1-209ENST00000474432 APOL1O14791 398 aa18.46■□□□□ 0.55
COL7A1-209ENST00000474432 ECEL1O95672 775 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms