RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SNAP91O60641 907 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 BCAS2O75934 225 aaPredicted RBP19.05■□□□□ 0.64
VIM-203ENST00000469543 PRAMEF12O95522 483 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 FGF1P05230 155 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 ZDHHC11BP0C7U3 371 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 ACVR1Q04771 509 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 PDK3Q15120 406 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 VPS26BQ4G0F5 336 aa19.05■□□□□ 0.64
VIM-203ENST00000469543 UTP6Q9NYH9 597 aaKnown RBP19.05■□□□□ 0.64
VIM-203ENST00000469543 CLASP2O75122 1294 aaKnown RBP19.04■□□□□ 0.64
VIM-203ENST00000469543 PGM3O95394 542 aa19.04■□□□□ 0.64
VIM-203ENST00000469543 SEC24AO95486 1093 aa19.04■□□□□ 0.64
VIM-203ENST00000469543 HLA-DPA1P20036 260 aa19.04■□□□□ 0.64
VIM-203ENST00000469543 C6orf52Q5T4I8 152 aa19.04■□□□□ 0.64
VIM-203ENST00000469543 GLT6D1Q7Z4J2 308 aa19.04■□□□□ 0.64
VIM-203ENST00000469543 SETD3Q86TU7 594 aaPredicted RBP19.04■□□□□ 0.64
VIM-203ENST00000469543 SLC22A9Q8IVM8 553 aa19.04■□□□□ 0.64
VIM-203ENST00000469543 GPR21Q99679 349 aa19.04■□□□□ 0.64
VIM-203ENST00000469543 TTPALQ9BTX7 342 aa19.04■□□□□ 0.64
VIM-203ENST00000469543 CINPQ9BW66 212 aaPredicted RBP19.04■□□□□ 0.64
VIM-203ENST00000469543 LRFN2Q9ULH4 789 aa19.04■□□□□ 0.64
VIM-203ENST00000469543 RHOBTB1O94844 696 aa19.04■□□□□ 0.64
VIM-203ENST00000469543 ADSLP30566 484 aaPredicted RBP19.04■□□□□ 0.64
VIM-203ENST00000469543 POLE2P56282 527 aa19.04■□□□□ 0.64
VIM-203ENST00000469543 CDKL1Q00532 357 aa19.04■□□□□ 0.64
VIM-203ENST00000469543 RING1Q06587 406 aa19.04■□□□□ 0.64
VIM-203ENST00000469543 HERC3Q15034 1050 aa19.04■□□□□ 0.64
VIM-203ENST00000469543 KIF19Q2TAC6 998 aa19.04■□□□□ 0.64
VIM-203ENST00000469543 RAET1EQ8TD07 263 aa19.04■□□□□ 0.64
VIM-203ENST00000469543 FATE1Q969F0 183 aa19.04■□□□□ 0.64
VIM-203ENST00000469543 L3HYPDHQ96EM0 354 aa19.04■□□□□ 0.64
VIM-203ENST00000469543 ATOH8Q96SQ7 321 aa19.04■□□□□ 0.64
VIM-203ENST00000469543 SRRDQ9UH36 339 aa19.04■□□□□ 0.64
VIM-203ENST00000469543 DNMT3LQ9UJW3 386 aa19.04■□□□□ 0.64
VIM-203ENST00000469543 GOLGA8CPA6NN73 597 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 SLC22A2O15244 555 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 NIPSNAP2O75323 286 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 NDST3O95803 873 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 SNRPB2P08579 225 aaKnown RBP19.03■□□□□ 0.64
VIM-203ENST00000469543 MAPKAPK2P49137 400 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 APLP1P51693 650 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 CCL23P55773 120 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 UGT3A1Q6NUS8 523 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 SPDYE1Q8NFV5 336 aaPredicted RBP19.03■□□□□ 0.64
VIM-203ENST00000469543 OR6K2Q8NGY2 324 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 LPGAT1Q92604 370 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 TSC22D3Q99576 134 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.03■□□□□ 0.64
VIM-203ENST00000469543 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.03■□□□□ 0.64
VIM-203ENST00000469543 ZNF840PA6NDX5 716 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 SRP72O76094 671 aaKnown RBP19.03■□□□□ 0.64
VIM-203ENST00000469543 SELPP16109 830 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 CES1P23141 567 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 EEF1DP29692 281 aaKnown RBP19.03■□□□□ 0.64
VIM-203ENST00000469543 CORO1AP31146 461 aaKnown RBP19.03■□□□□ 0.64
VIM-203ENST00000469543 DIO3P55073 304 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 TRIM25Q14258 630 aaKnown RBP19.03■□□□□ 0.64
VIM-203ENST00000469543 CAPRIN1Q14444 709 aaKnown RBP19.03■□□□□ 0.64
VIM-203ENST00000469543 PTPRNQ16849 979 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 SIDT2Q8NBJ9 832 aaKnown RBP19.03■□□□□ 0.64
VIM-203ENST00000469543 NUDT8Q8WV74 236 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 CNBD2Q96M20 576 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 PSKH2Q96QS6 385 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 ACOX2Q99424 681 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 MGME1Q9BQP7 344 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 AARSD1Q9BTE6 412 aaKnown RBP19.03■□□□□ 0.64
VIM-203ENST00000469543 SARS2Q9NP81 518 aaKnown RBP19.03■□□□□ 0.64
VIM-203ENST00000469543 UBA2Q9UBT2 640 aaPredicted RBP19.03■□□□□ 0.64
VIM-203ENST00000469543 FKBPLQ9UIM3 349 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 VPS28Q9UK41 221 aa19.03■□□□□ 0.64
VIM-203ENST00000469543 SUPT3HB4E1H0 165 aa19.02■□□□□ 0.64
VIM-203ENST00000469543 MRASO14807 208 aa19.02■□□□□ 0.64
VIM-203ENST00000469543 NRP2O60462 931 aa19.02■□□□□ 0.64
VIM-203ENST00000469543 SUPT3HO75486 399 aa19.02■□□□□ 0.64
VIM-203ENST00000469543 ETS2P15036 469 aa19.02■□□□□ 0.64
VIM-203ENST00000469543 SQLEQ14534 574 aa19.02■□□□□ 0.64
VIM-203ENST00000469543 CYTH1Q15438 398 aa19.02■□□□□ 0.64
VIM-203ENST00000469543 CLYBLQ8N0X4 340 aa19.02■□□□□ 0.64
VIM-203ENST00000469543 GABPB2Q8TAK5 448 aaPredicted RBP19.02■□□□□ 0.64
VIM-203ENST00000469543 TWIST2Q8WVJ9 160 aa19.02■□□□□ 0.64
VIM-203ENST00000469543 LRTOMTQ8WZ04 291 aa19.02■□□□□ 0.64
VIM-203ENST00000469543 SPATA17Q96L03 361 aa19.02■□□□□ 0.64
VIM-203ENST00000469543 HBEGFQ99075 208 aa19.02■□□□□ 0.64
VIM-203ENST00000469543 VN1R3Q9BXE9 311 aa19.02■□□□□ 0.64
VIM-203ENST00000469543 NR5A2O00482 541 aa19.02■□□□□ 0.63
VIM-203ENST00000469543 INSIG1O15503 277 aa19.02■□□□□ 0.63
VIM-203ENST00000469543 OR6B1O95007 311 aa19.02■□□□□ 0.63
VIM-203ENST00000469543 SLC7A2P52569 658 aa19.02■□□□□ 0.63
VIM-203ENST00000469543 ZNF140P52738 457 aaPredicted RBP19.02■□□□□ 0.63
VIM-203ENST00000469543 OXCT1P55809 520 aa19.02■□□□□ 0.63
VIM-203ENST00000469543 SATB1Q01826 763 aa19.02■□□□□ 0.63
VIM-203ENST00000469543 TNK2Q07912 1038 aa19.02■□□□□ 0.63
VIM-203ENST00000469543 STX5Q13190 355 aa19.02■□□□□ 0.63
VIM-203ENST00000469543 ADGRE1Q14246 886 aa19.02■□□□□ 0.63
VIM-203ENST00000469543 UGT2A3Q6UWM9 527 aa19.02■□□□□ 0.63
VIM-203ENST00000469543 AMIGO2Q86SJ2 522 aa19.02■□□□□ 0.63
VIM-203ENST00000469543 TEX37Q96LM6 180 aa19.02■□□□□ 0.63
VIM-203ENST00000469543 BIRC8Q96P09 236 aa19.02■□□□□ 0.63
VIM-203ENST00000469543 GBP5Q96PP8 586 aa19.02■□□□□ 0.63
VIM-203ENST00000469543 CDK15Q96Q40 435 aa19.02■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms