RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 ZNF248Q8NDW4 579 aa19.02■□□□□ 0.64
COL7A1-207ENST00000467985 LPCAT1Q8NF37 534 aa19.02■□□□□ 0.64
COL7A1-207ENST00000467985 LUC7LQ9NQ29 371 aaKnown RBP19.02■□□□□ 0.64
COL7A1-207ENST00000467985 SATB2Q9UPW6 733 aa19.02■□□□□ 0.64
COL7A1-207ENST00000467985 PCDHGA8Q9Y5G5 932 aa19.02■□□□□ 0.64
COL7A1-207ENST00000467985 RGSL1A5PLK6 1076 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 B4DGG1 531 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 NUDT21O43809 227 aaKnown RBP19.01■□□□□ 0.63
COL7A1-207ENST00000467985 NOBOXO60393 691 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 PRLP01236 227 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 COMTP21964 271 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 CDC25BP30305 580 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 CD86P42081 329 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 MAGEA1P43355 309 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 GNPDA1P46926 289 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 NR2C2P49116 596 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 TFDP2Q14188 446 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 C3orf38Q5JPI3 329 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 CCDC170Q8IYT3 715 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 TC2NQ8N9U0 490 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 EXD1Q8NHP7 514 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 WDR36Q8NI36 951 aaKnown RBP19.01■□□□□ 0.63
COL7A1-207ENST00000467985 LRRN4Q8WUT4 740 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 SCARF2Q96GP6 870 aaPredicted RBP19.01■□□□□ 0.63
COL7A1-207ENST00000467985 HIC2Q96JB3 615 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 OLFM3Q96PB7 478 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 MLPHQ9BV36 600 aaPredicted RBP19.01■□□□□ 0.63
COL7A1-207ENST00000467985 CDH19Q9H159 772 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 CD84Q9UIB8 345 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 RABGEF1Q9UJ41 708 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 SUFUQ9UMX1 484 aa19.01■□□□□ 0.63
COL7A1-207ENST00000467985 CCDC187A0A096LP49 1063 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 ANKRD66B4E2M5 251 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 D6RAR5 112 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 ZW10O43264 779 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 PSTPIP1O43586 416 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 LCA5LO95447 670 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 SOD1P00441 154 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 RPLP0P05388 317 aaKnown RBP19■□□□□ 0.63
COL7A1-207ENST00000467985 MMP2P08253 660 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 NOP2P46087 812 aaKnown RBP19■□□□□ 0.63
COL7A1-207ENST00000467985 SKOR1P84550 965 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 ZBTB17Q13105 803 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 EIF3IQ13347 325 aaKnown RBP19■□□□□ 0.63
COL7A1-207ENST00000467985 HLTFQ14527 1009 aaKnown RBP eCLIP19■□□□□ 0.63
COL7A1-207ENST00000467985 CCNJLQ8IV13 435 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 ARL14Q8N4G2 192 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 CNTD1Q8N815 330 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 SPC24Q8NBT2 197 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 CCL4L1Q8NHW4 92 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 CCHCR1Q8TD31 782 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 SCAMP4Q969E2 229 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 RNF25Q96BH1 459 aaPredicted RBP19■□□□□ 0.63
COL7A1-207ENST00000467985 LIN37Q96GY3 246 aaPredicted RBP19■□□□□ 0.63
COL7A1-207ENST00000467985 SLC46A1Q96NT5 459 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 STRADBQ9C0K7 418 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 LRRN3Q9H3W5 708 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 ASCL3Q9NQ33 180 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 LRIT1Q9P2V4 623 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 PTPRQQ9UMZ3 2332 aa19■□□□□ 0.63
COL7A1-207ENST00000467985 MGAQ8IWI9 3026 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 A0A0U1RQS6 177 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 C1orf232A0A0U1RR37 186 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 CLDN7O95471 211 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 FUCA1P04066 466 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 TNNT1P13805 278 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 ITPKBP27987 946 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 PDX1P52945 283 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 CCL7P80098 99 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 CCDC173Q0VFZ6 552 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 SPA17Q15506 151 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 SLC14A2Q15849 920 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 QPCTQ16769 361 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 RFLNAQ6ZTI6 216 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 NT5DC3Q86UY8 548 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 NRROSQ86YC3 692 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 IMP4Q96G21 291 aaKnown RBP18.99■□□□□ 0.63
COL7A1-207ENST00000467985 TMEM74Q96NL1 305 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 SMIM14Q96QK8 99 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 RIOK2Q9BVS4 552 aaKnown RBP18.99■□□□□ 0.63
COL7A1-207ENST00000467985 SLC25A51Q9H1U9 297 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 SUDS3Q9H7L9 328 aaPredicted RBP18.99■□□□□ 0.63
COL7A1-207ENST00000467985 PKD2L2Q9NZM6 624 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 TAAR2Q9P1P5 351 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 ALG6Q9Y672 507 aa18.99■□□□□ 0.63
COL7A1-207ENST00000467985 FGF1P05230 155 aa18.98■□□□□ 0.63
COL7A1-207ENST00000467985 CYLC1P35663 651 aaPredicted RBP18.98■□□□□ 0.63
COL7A1-207ENST00000467985 ADCY8P40145 1251 aa18.98■□□□□ 0.63
COL7A1-207ENST00000467985 CDKN2BP42772 138 aa18.98■□□□□ 0.63
COL7A1-207ENST00000467985 POLD2P49005 469 aa18.98■□□□□ 0.63
COL7A1-207ENST00000467985 DYNLT1P63172 113 aa18.98■□□□□ 0.63
COL7A1-207ENST00000467985 CTBSQ01459 385 aa18.98■□□□□ 0.63
COL7A1-207ENST00000467985 LRP8Q14114 963 aa18.98■□□□□ 0.63
COL7A1-207ENST00000467985 TAZQ16635 292 aa18.98■□□□□ 0.63
COL7A1-207ENST00000467985 DOK6Q6PKX4 331 aa18.98■□□□□ 0.63
COL7A1-207ENST00000467985 MFSD7Q6UXD7 560 aa18.98■□□□□ 0.63
COL7A1-207ENST00000467985 NPNTQ6UXI9 565 aa18.98■□□□□ 0.63
COL7A1-207ENST00000467985 SPRED1Q7Z699 444 aa18.98■□□□□ 0.63
COL7A1-207ENST00000467985 C17orf82Q86X59 251 aaPredicted RBP18.98■□□□□ 0.63
COL7A1-207ENST00000467985 Q8N9G6 341 aaPredicted RBP18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms