RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 MRPL57Q9BQC6 102 aaKnown RBP9.47□□□□□ -0.89
CUX1-206ENST00000437600 TMEM175Q9BSA9 504 aa9.47□□□□□ -0.89
CUX1-206ENST00000437600 C17orf80Q9BSJ5 609 aa9.47□□□□□ -0.89
CUX1-206ENST00000437600 WDR41Q9HAD4 459 aa9.47□□□□□ -0.89
CUX1-206ENST00000437600 TLR9Q9NR96 1032 aa9.47□□□□□ -0.89
CUX1-206ENST00000437600 PLK2Q9NYY3 685 aa9.47□□□□□ -0.89
CUX1-206ENST00000437600 IKZF3Q9UKT9 509 aa9.47□□□□□ -0.89
CUX1-206ENST00000437600 ANGPTL2Q9UKU9 493 aa9.47□□□□□ -0.89
CUX1-206ENST00000437600 BLOC1S6Q9UL45 172 aa9.47□□□□□ -0.89
CUX1-206ENST00000437600 SORCS3Q9UPU3 1222 aa9.47□□□□□ -0.89
CUX1-206ENST00000437600 BTRCQ9Y297 605 aa9.47□□□□□ -0.89
CUX1-206ENST00000437600 YIPF1Q9Y548 306 aa9.47□□□□□ -0.89
CUX1-206ENST00000437600 SPO11Q9Y5K1 396 aa9.47□□□□□ -0.89
CUX1-206ENST00000437600 SLC4A7Q9Y6M7 1214 aa9.47□□□□□ -0.89
CUX1-206ENST00000437600 TCAF2A6NFQ2 919 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 TMEM114B3SHH9 223 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 NRG2O14511 850 aaPredicted RBP9.46□□□□□ -0.89
CUX1-206ENST00000437600 LTA4HP09960 611 aaKnown RBP9.46□□□□□ -0.89
CUX1-206ENST00000437600 CORO1AP31146 461 aaKnown RBP9.46□□□□□ -0.89
CUX1-206ENST00000437600 PPARGP37231 505 aaPredicted RBP9.46□□□□□ -0.89
CUX1-206ENST00000437600 PBX2P40425 430 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 HADHAP40939 763 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 ALDH1A3P47895 512 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 MTTPP55157 894 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 SH3BP2P78314 561 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 DSG1Q02413 1049 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 CDK18Q07002 472 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 SERINC3Q13530 473 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 FLOT2Q14254 428 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 TBCCQ15814 346 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 MMEL1Q495T6 779 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 KIAA0930Q6ICG6 404 aaPredicted RBP9.46□□□□□ -0.89
CUX1-206ENST00000437600 DHDDSQ86SQ9 333 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 CNTN4Q8IWV2 1026 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 BHLHE22Q8NFJ8 381 aaPredicted RBP9.46□□□□□ -0.89
CUX1-206ENST00000437600 OR4K2Q8NGD2 314 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 B4GALNT2Q8NHY0 566 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 HMGCLL1Q8TB92 370 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 C1orf74Q96LT6 269 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 ZNF558Q96NG5 402 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 TRIM4Q9C037 500 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 DNMT3LQ9UJW3 386 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 RPL26L1Q9UNX3 145 aaKnown RBP9.46□□□□□ -0.89
CUX1-206ENST00000437600 LRCH1Q9Y2L9 728 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 MYO15AQ9UKN7 3530 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 MYLKQ15746 1914 aa9.46□□□□□ -0.89
CUX1-206ENST00000437600 F5H5T6 163 aa9.46□□□□□ -0.9
CUX1-206ENST00000437600 H3BNX3 289 aa9.46□□□□□ -0.9
CUX1-206ENST00000437600 CD3EAPO15446 510 aaKnown RBP9.46□□□□□ -0.9
CUX1-206ENST00000437600 PSMD3O43242 534 aa9.46□□□□□ -0.9
CUX1-206ENST00000437600 SNAP91O60641 907 aa9.46□□□□□ -0.9
CUX1-206ENST00000437600 PRAMEF12O95522 483 aa9.46□□□□□ -0.9
CUX1-206ENST00000437600 SOD2P04179 222 aa9.46□□□□□ -0.9
CUX1-206ENST00000437600 NELFEP18615 380 aaKnown RBP9.46□□□□□ -0.9
CUX1-206ENST00000437600 CHRM3P20309 590 aa9.46□□□□□ -0.9
CUX1-206ENST00000437600 ATP5F1P24539 256 aaPredicted RBP9.46□□□□□ -0.9
CUX1-206ENST00000437600 CRABP2P29373 138 aa9.46□□□□□ -0.9
CUX1-206ENST00000437600 PRDX3P30048 256 aaKnown RBP9.46□□□□□ -0.9
CUX1-206ENST00000437600 GKP32189 559 aa9.46□□□□□ -0.9
CUX1-206ENST00000437600 MAGEA10P43363 369 aaPredicted RBP9.46□□□□□ -0.9
CUX1-206ENST00000437600 MRPS35P82673 323 aaKnown RBP9.46□□□□□ -0.9
CUX1-206ENST00000437600 ZXDBP98169 803 aa9.46□□□□□ -0.9
CUX1-206ENST00000437600 POU4F1Q01851 419 aa9.46□□□□□ -0.9
CUX1-206ENST00000437600 SHHQ15465 462 aa9.46□□□□□ -0.9
CUX1-206ENST00000437600 TECRLQ5HYJ1 363 aa9.46□□□□□ -0.9
CUX1-206ENST00000437600 HECTD3Q5T447 861 aa9.46□□□□□ -0.9
CUX1-206ENST00000437600 SPATA24Q86W54 205 aa9.46□□□□□ -0.9
CUX1-206ENST00000437600 GALNT15Q8N3T1 639 aa9.46□□□□□ -0.9
CUX1-206ENST00000437600 DRAXINQ8NBI3 349 aaPredicted RBP9.46□□□□□ -0.9
CUX1-206ENST00000437600 TRPC4APQ8TEL6 797 aa9.46□□□□□ -0.9
CUX1-206ENST00000437600 EZH1Q92800 747 aaPredicted RBP9.46□□□□□ -0.9
CUX1-206ENST00000437600 SLC30A3Q99726 388 aa9.46□□□□□ -0.9
CUX1-206ENST00000437600 RTKNQ9BST9 563 aa9.46□□□□□ -0.9
CUX1-206ENST00000437600 ABCG8Q9H221 673 aa9.46□□□□□ -0.9
CUX1-206ENST00000437600 SEMA4BQ9NPR2 832 aaPredicted RBP9.46□□□□□ -0.9
CUX1-206ENST00000437600 TMEM248Q9NWD8 314 aa9.46□□□□□ -0.9
CUX1-206ENST00000437600 E7ENX8 843 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 TEX28O15482 410 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 PEX1O43933 1283 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 BNIP3LO60238 219 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 CCNT2O60583 730 aaKnown RBP9.45□□□□□ -0.9
CUX1-206ENST00000437600 GLP2RO95838 553 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 LINC00032P0C843 101 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 ARL1P40616 181 aaPredicted RBP9.45□□□□□ -0.9
CUX1-206ENST00000437600 LEPRP48357 1165 aaKnown RBP9.45□□□□□ -0.9
CUX1-206ENST00000437600 TUFMP49411 452 aaKnown RBP9.45□□□□□ -0.9
CUX1-206ENST00000437600 AGTR2P50052 363 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 CYP4F8P98187 520 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 TIAL1Q01085 375 aaKnown RBP eCLIP9.45□□□□□ -0.9
CUX1-206ENST00000437600 NSUN2Q08J23 767 aaKnown RBP eCLIP9.45□□□□□ -0.9
CUX1-206ENST00000437600 OR4D1Q15615 310 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 AGAP9Q5VTM2 703 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 FOXB2Q5VYV0 432 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 PAQR3Q6TCH7 311 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 CYHR1Q6ZMK1 362 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 DNAJB7Q7Z6W7 309 aaPredicted RBP9.45□□□□□ -0.9
CUX1-206ENST00000437600 ARL14EPQ8N8R7 260 aaPredicted RBP9.45□□□□□ -0.9
CUX1-206ENST00000437600 MDGA1Q8NFP4 955 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 SPATA17Q96L03 361 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 PRICKLE1Q96MT3 831 aaPredicted RBP9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms