RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 KLHDC8BQ8IXV7 354 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 AADATQ8N5Z0 425 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 CCDC63Q8NA47 563 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 MDGA1Q8NFP4 955 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 IPMKQ8NFU5 416 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 ARRDC3Q96B67 414 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 ECHDC3Q96DC8 303 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 IFT43Q96FT9 208 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 PPP1R16AQ96I34 528 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 MRGPRX2Q96LB1 330 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 TDRD1Q9BXT4 1180 aaKnown RBP13.43□□□□□ -0.26
LIMS1-204ENST00000409441 DYRK4Q9NR20 520 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 DKK3Q9UBP4 350 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 EBF1Q9UH73 591 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 SCML1Q9UN30 329 aa13.43□□□□□ -0.26
LIMS1-204ENST00000409441 ARIH1Q9Y4X5 557 aaPredicted RBP13.43□□□□□ -0.26
LIMS1-204ENST00000409441 LOC285095A0A1B0GVY8 99 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 PLK4O00444 970 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 LAMTOR5O43504 91 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 FZD6O60353 706 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 GPR37L1O60883 481 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 RASSF9O75901 435 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 PAPSS2O95340 614 aaPredicted RBP13.42□□□□□ -0.26
LIMS1-204ENST00000409441 POLBP06746 335 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 ACADMP11310 421 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 TIMP2P16035 220 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 ITGB7P26010 798 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 PXNP49023 591 aaPredicted RBP13.42□□□□□ -0.26
LIMS1-204ENST00000409441 SESN2P58004 480 aaPredicted RBP13.42□□□□□ -0.26
LIMS1-204ENST00000409441 POLR2LP62875 67 aaKnown RBP13.42□□□□□ -0.26
LIMS1-204ENST00000409441 MGAT5Q09328 741 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 CNTN1Q12860 1018 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 SF3A3Q12874 501 aaKnown RBP eCLIP13.42□□□□□ -0.26
LIMS1-204ENST00000409441 CRYMQ14894 314 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 SETDB1Q15047 1291 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 CASC4Q6P4E1 433 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 BRAT1Q6PJG6 821 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.42□□□□□ -0.26
LIMS1-204ENST00000409441 OTOAQ7RTW8 1153 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 PACS2Q86VP3 889 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 RASSF3Q86WH2 238 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 ZSWIM9Q86XI8 627 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 HDDC3Q8N4P3 179 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 RAB3IL1Q8TBN0 382 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 GANCQ8TET4 914 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 SPOCK2Q92563 424 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 SRPK1Q96SB4 655 aaKnown RBP13.42□□□□□ -0.26
LIMS1-204ENST00000409441 OMDQ99983 421 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 ADGRE3Q9BY15 652 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 LRRC40Q9H9A6 602 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 SLCO1B3Q9NPD5 702 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 CASS4Q9NQ75 786 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 ITM2CQ9NQX7 267 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 FBXL12Q9NXK8 326 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 PLLPQ9Y342 182 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 CKAP5Q14008 2032 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 A0A1W2PQ67 120 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 MAGEB16A2A368 324 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 GALR2O43603 387 aaPredicted RBP13.42□□□□□ -0.26
LIMS1-204ENST00000409441 RNASEH2AO75792 299 aaKnown RBP13.42□□□□□ -0.26
LIMS1-204ENST00000409441 ATP5HO75947 161 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 TGDSO95455 350 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 CRHR1P34998 444 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 ADRA1AP35348 466 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 SERPINB4P48594 390 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 NPY2RP49146 381 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 SFSWAPQ12872 951 aaKnown RBP13.42□□□□□ -0.26
LIMS1-204ENST00000409441 UGP2Q16851 508 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 FBXL19Q6PCT2 694 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 TSSK4Q6SA08 328 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 RANBP10Q6VN20 620 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 ERN2Q76MJ5 926 aaKnown RBP13.42□□□□□ -0.26
LIMS1-204ENST00000409441 FITM2Q8N6M3 262 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 C10orf82Q8WW14 230 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 PIH1D2Q8WWB5 315 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 FEM1CQ96JP0 617 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 RMDN2Q96LZ7 410 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 FAM111AQ96PZ2 611 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 TRIB3Q96RU7 358 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 APOL2Q9BQE5 337 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 FICDQ9BVA6 458 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 FSD1LQ9BXM9 530 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 HDAC8Q9BY41 377 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 SLC40A1Q9NP59 571 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 SYBUQ9NX95 663 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 BFARQ9NZS9 450 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 NCKAP1Q9Y2A7 1128 aa13.42□□□□□ -0.26
LIMS1-204ENST00000409441 ZDBF2Q9HCK1 2354 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 A0A1W2PP55 124 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 TSPAN11A1L157 253 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 PRR33A8MZF0 331 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 ANKRD66B4E2M5 251 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 UGT1A9O60656 530 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 USP12O75317 370 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 NDST3O95803 873 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 XPAP23025 273 aaPredicted RBP13.41□□□□□ -0.26
LIMS1-204ENST00000409441 HOXA6P31267 233 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 DRD3P35462 400 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 P2RY2P41231 377 aa13.41□□□□□ -0.26
LIMS1-204ENST00000409441 TPMTP51580 245 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms