RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 NCANO14594 1321 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 PLIN4Q96Q06 1357 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 SMIM31A0A1B0GVY4 71 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 CHADO15335 359 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 PHGDHO43175 533 aaKnown RBP7.3□□□□□ -1.24
SCN9A-202ENST00000409435 FGGP02679 453 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 CEBPBP17676 345 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 ATF6P18850 670 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 S100A2P29034 98 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 TRAF3Q13114 568 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 DPCR1Q3MIW9 517 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 PARP15Q460N3 678 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 DNAAF5Q86Y56 855 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 EID2Q8N6I1 236 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 RIN3Q8TB24 985 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 ZNF507Q8TCN5 953 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 MOCOSQ96EN8 888 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 LRRC40Q9H9A6 602 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 MIEF1Q9NQG6 463 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 APOBEC3BQ9UH17 382 aaKnown RBP7.3□□□□□ -1.24
SCN9A-202ENST00000409435 GNPTGQ9UJJ9 305 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 IGKV6D-41A0A0C4DH26 115 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 ARHGEF33A8MVX0 844 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 PAGE1O75459 146 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 DHCR24Q15392 516 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 AGBL2Q5U5Z8 902 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 LRRC6Q86X45 466 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 EMC1Q8N766 993 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 SPPL3Q8TCT6 385 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 FCRL2Q96LA5 508 aaPredicted RBP7.29□□□□□ -1.24
SCN9A-202ENST00000409435 TMPRSS4Q9NRS4 437 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 SNX24Q9Y343 169 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 IGHEP01854 428 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 GLI1P08151 1106 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 CPA2P48052 419 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 CCR4P51679 360 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 ARSEP51690 589 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 DLG1Q12959 904 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 CHD4Q14839 1912 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 EIF4HQ15056 248 aaKnown RBP7.29□□□□□ -1.24
SCN9A-202ENST00000409435 GPR149Q86SP6 731 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 COL22A1Q8NFW1 1626 aaPredicted RBP7.29□□□□□ -1.24
SCN9A-202ENST00000409435 OR2T3Q8NH03 318 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 ZNF606Q8WXB4 792 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 ATL1Q8WXF7 558 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 DNASE1L2Q92874 299 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 USP7Q93009 1102 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 NAT6Q93015 286 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 FAM162AQ96A26 154 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 EXOC2Q96KP1 924 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 ELOVL6Q9H5J4 265 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 EIF2B4Q9UI10 523 aaKnown RBP7.29□□□□□ -1.24
SCN9A-202ENST00000409435 TRHDEQ9UKU6 1024 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 GNG14A0A1W2PPG7 69 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 FAM187AA6NFU0 413 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 CAPN14A8MX76 684 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 HLA-EP13747 358 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 STIP1P31948 543 aaKnown RBP7.29□□□□□ -1.24
SCN9A-202ENST00000409435 CSKP41240 450 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 RAB2AP61019 212 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 STX4Q12846 297 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 RALGDSQ12967 914 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 BMPR2Q13873 1038 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 NFIL3Q16649 462 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 ERICH5Q6P6B1 374 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 CCDC115Q96NT0 180 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 GAREM1Q9H706 876 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 LDB2O43679 373 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 RNGTTO60942 597 aaKnown RBP7.29□□□□□ -1.24
SCN9A-202ENST00000409435 TIPRLO75663 272 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 CHN1P15882 459 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 GSTT1P30711 240 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 ERFP50548 548 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 SLC12A3P55017 1021 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 S100A12P80511 92 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 ITIH4Q14624 930 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 STRADAQ7RTN6 431 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 CHCHD4Q8N4Q1 142 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 DENND6BQ8NEG7 585 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 CASKIN2Q8WXE0 1202 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 UBE2QL1A1L167 161 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 CHP2O43745 196 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 SDC3O75056 442 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 FKBP6O75344 327 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 ATP6V1G2O95670 118 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 TOP3BO95985 862 aaKnown RBP7.29□□□□□ -1.24
SCN9A-202ENST00000409435 TTKP33981 857 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 ARF5P84085 180 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 C1DQ13901 141 aaKnown RBP7.29□□□□□ -1.24
SCN9A-202ENST00000409435 NR1D2Q14995 579 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 QPRTQ15274 297 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 IZUMO2Q6UXV1 221 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 C15orf39Q6ZRI6 1047 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 CLVS1Q8IUQ0 354 aaPredicted RBP7.29□□□□□ -1.24
SCN9A-202ENST00000409435 TMEM156Q8N614 296 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 FRMD6Q96NE9 622 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 OSBPL8Q9BZF1 889 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 THSD1Q9NS62 852 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 FNIP2Q9P278 1114 aa7.29□□□□□ -1.24
SCN9A-202ENST00000409435 MTRRQ9UBK8 725 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms