RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 CXCR3P49682 368 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 LATO43561 262 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 CASP1P29466 404 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 RPS9P46781 194 aaKnown RBP4.93□□□□□ -1.62
PCDH9-201ENST00000377861 KCNC4Q03721 635 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 PIGGQ5H8A4 983 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 TSC22D4Q9Y3Q8 395 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 SUV39H1O43463 412 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 UHMK1Q8TAS1 419 aaKnown RBP4.93□□□□□ -1.62
PCDH9-201ENST00000377861 CADM1Q9BY67 442 aaKnown RBP4.93□□□□□ -1.62
PCDH9-201ENST00000377861 SLC7A8Q9UHI5 535 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 CYP2D6P10635 497 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 STK32CQ86UX6 486 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 DIP2CQ9Y2E4 1556 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 DARSP14868 501 aaKnown RBP4.93□□□□□ -1.62
PCDH9-201ENST00000377861 FKBP2P26885 142 aaKnown RBP4.93□□□□□ -1.62
PCDH9-201ENST00000377861 C2CD6Q53TS8 623 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 LHFPL3Q86UP9 236 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 POF1BQ8WVV4 589 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 ZHX1-C8orf76Q96EF9 292 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 HEBP2Q9Y5Z4 205 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 LRRTM2O43300 516 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 RORAP35398 523 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 CDH18Q13634 790 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 HEPACAMQ14CZ8 416 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 Q3C1V9 767 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 CCDC149Q6ZUS6 474 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 CPT1BQ92523 772 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 ELMO2Q96JJ3 720 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 RANBP3Q9H6Z4 567 aaPredicted RBP4.93□□□□□ -1.62
PCDH9-201ENST00000377861 RWDD3Q9Y3V2 267 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 GJA3Q9Y6H8 435 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 ZNF30P17039 623 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 KREMEN1Q96MU8 473 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 PRDM12Q9H4Q4 367 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 SEMA3GQ9NS98 782 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 PKD2L1Q9P0L9 805 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 CEP152O94986 1710 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 ELOVL7A1L3X0 281 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 ARL13AQ5H913 290 aaPredicted RBP4.93□□□□□ -1.62
PCDH9-201ENST00000377861 MAMDC4Q6UXC1 1216 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 TMC8Q8IU68 726 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 LRRC20Q8TCA0 184 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 NXF3Q9H4D5 531 aaKnown RBP4.93□□□□□ -1.62
PCDH9-201ENST00000377861 SSR3Q9UNL2 185 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 SKAP2O75563 359 aaPredicted RBP4.93□□□□□ -1.62
PCDH9-201ENST00000377861 FGBP02675 491 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 GUCA1AP43080 201 aaPredicted RBP4.93□□□□□ -1.62
PCDH9-201ENST00000377861 PHKG1Q16816 387 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 LPCAT4Q643R3 524 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 FAM35AQ86V20 835 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 ZNF248Q8NDW4 579 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 KCTD12Q96CX2 325 aaKnown RBP4.93□□□□□ -1.62
PCDH9-201ENST00000377861 ZNF641Q96N77 438 aaPredicted RBP4.93□□□□□ -1.62
PCDH9-201ENST00000377861 MLPHQ9BV36 600 aaPredicted RBP4.93□□□□□ -1.62
PCDH9-201ENST00000377861 GPR63Q9BZJ6 419 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 CD274Q9NZQ7 290 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 OPTCQ9UBM4 332 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 CHKBQ9Y259 395 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 TACSTD2P09758 323 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 SSTR1P30872 391 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 ACSM2AQ08AH3 577 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 ACSM2BQ68CK6 577 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 USP43Q70EL4 1123 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 NENFQ9UMX5 172 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 DGKKQ5KSL6 1271 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 THG1LQ9NWX6 298 aaKnown RBP4.93□□□□□ -1.62
PCDH9-201ENST00000377861 IFT52Q9Y366 437 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 TTLL3Q9Y4R7 772 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 PROM1O43490 865 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 TMEM62Q0P6H9 643 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 ORC1Q13415 861 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 CYP2A13Q16696 494 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 OR2W6PQ8NHA6 318 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 C7orf50Q9BRJ6 194 aaKnown RBP4.93□□□□□ -1.62
PCDH9-201ENST00000377861 KIAA1522Q9P206 1035 aaPredicted RBP4.93□□□□□ -1.62
PCDH9-201ENST00000377861 DYNC1LI2O43237 492 aaPredicted RBP4.93□□□□□ -1.62
PCDH9-201ENST00000377861 TBX10O75333 385 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 RCVRNP35243 200 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 CD86P42081 329 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 LENG8Q96PV6 779 aaPredicted RBP4.93□□□□□ -1.62
PCDH9-201ENST00000377861 POLR2J2Q9GZM3 115 aaKnown RBP4.93□□□□□ -1.62
PCDH9-201ENST00000377861 POLR2J3Q9H1A7 115 aaKnown RBP4.93□□□□□ -1.62
PCDH9-201ENST00000377861 TAS2R8Q9NYW2 309 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.93□□□□□ -1.62
PCDH9-201ENST00000377861 KELP23276 732 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 SLC6A2P23975 617 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 CSNK1DP48730 415 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 ARL10Q8N8L6 244 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 YIPF2Q9BWQ6 316 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 ZFYVE28Q9HCC9 887 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 PCDHB3Q9Y5E6 796 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 NFIBO00712 420 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 ITM2AO43736 263 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 GLRA4Q5JXX5 417 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 OR2T12Q8NG77 320 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 SKA1Q96BD8 255 aa4.93□□□□□ -1.62
PCDH9-201ENST00000377861 E9PBE3 544 aa4.92□□□□□ -1.62
PCDH9-201ENST00000377861 JUNBP17275 347 aaPredicted RBP4.92□□□□□ -1.62
PCDH9-201ENST00000377861 CHRNB2P17787 502 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms