RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 INSIG1O15503 277 aa11.57□□□□□ -0.56
SYNE1-204ENST00000367248 ANXA6P08133 673 aa11.57□□□□□ -0.56
SYNE1-204ENST00000367248 ATXN1P54253 815 aaKnown RBP11.57□□□□□ -0.56
SYNE1-204ENST00000367248 CDH13P55290 713 aa11.57□□□□□ -0.56
SYNE1-204ENST00000367248 WDR47O94967 919 aa11.57□□□□□ -0.56
SYNE1-204ENST00000367248 REXO5Q96IC2 774 aaKnown RBP11.57□□□□□ -0.56
SYNE1-204ENST00000367248 KCTD5Q9NXV2 234 aa11.57□□□□□ -0.56
SYNE1-204ENST00000367248 DTLQ9NZJ0 730 aa11.57□□□□□ -0.56
SYNE1-204ENST00000367248 SNX3O60493 162 aa11.57□□□□□ -0.56
SYNE1-204ENST00000367248 SNUPNO95149 360 aaKnown RBP11.57□□□□□ -0.56
SYNE1-204ENST00000367248 FASP25445 335 aa11.57□□□□□ -0.56
SYNE1-204ENST00000367248 CXCR3P49682 368 aa11.57□□□□□ -0.56
SYNE1-204ENST00000367248 DPYSL2Q16555 572 aa11.57□□□□□ -0.56
SYNE1-204ENST00000367248 RNASEH2BQ5TBB1 312 aaKnown RBP11.57□□□□□ -0.56
SYNE1-204ENST00000367248 ENPP7Q6UWV6 458 aa11.57□□□□□ -0.56
SYNE1-204ENST00000367248 PXYLP1Q8TE99 480 aa11.57□□□□□ -0.56
SYNE1-204ENST00000367248 PRRG3Q9BZD7 231 aa11.57□□□□□ -0.56
SYNE1-204ENST00000367248 SAR1AQ9NR31 198 aa11.57□□□□□ -0.56
SYNE1-204ENST00000367248 AP3M1Q9Y2T2 418 aa11.57□□□□□ -0.56
SYNE1-204ENST00000367248 DEAF1O75398 565 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-204ENST00000367248 ITPKBP27987 946 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 AKT2P31751 481 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 CACNG1Q06432 222 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 DRICH1Q6PGQ1 229 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-204ENST00000367248 APTXQ7Z2E3 356 aaKnown RBP11.56□□□□□ -0.56
SYNE1-204ENST00000367248 ZNF786Q8N393 782 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 SLC44A1Q8WWI5 657 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 CLP1Q92989 425 aaKnown RBP11.56□□□□□ -0.56
SYNE1-204ENST00000367248 C8orf48Q96LL4 319 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 MYLK2Q9H1R3 596 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 TCAF1Q9Y4C2 921 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 A0A1W2PPM1 405 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 SAC3D1A6NKF1 404 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 FPGTO14772 594 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 UBTFL6P0CB48 400 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-204ENST00000367248 GNPDA1P46926 289 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 AP1ARQ63HQ0 302 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 KIAA0408Q6ZU52 694 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 RPAINQ86UA6 219 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 ZFP28Q8NHY6 868 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 MFSD3Q96ES6 412 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 ROGDIQ9GZN7 287 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 NR2E1Q9Y466 385 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 GTPBP1O00178 669 aaKnown RBP11.56□□□□□ -0.56
SYNE1-204ENST00000367248 HGFP14210 728 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 CLK1P49759 484 aaKnown RBP11.56□□□□□ -0.56
SYNE1-204ENST00000367248 RPS24P62847 133 aaKnown RBP11.56□□□□□ -0.56
SYNE1-204ENST00000367248 RPL38P63173 70 aaKnown RBP11.56□□□□□ -0.56
SYNE1-204ENST00000367248 IRX1P78414 480 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-204ENST00000367248 COL9A2Q14055 689 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-204ENST00000367248 CCDC142Q17RM4 750 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 USP39Q53GS9 565 aaKnown RBP11.56□□□□□ -0.56
SYNE1-204ENST00000367248 AGMOQ6ZNB7 445 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 OSTM1Q86WC4 334 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 Q8N9G6 341 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-204ENST00000367248 ACTRT2Q8TDY3 377 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 METTL21AQ8WXB1 218 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 LIMD1Q9UGP4 676 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 TLR6Q9Y2C9 796 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 SDK1Q7Z5N4 2213 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 FAM220BPB1ANY3 271 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 HNRNPLP14866 589 aaKnown RBP eCLIP11.56□□□□□ -0.56
SYNE1-204ENST00000367248 CRATP43155 626 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 COPZ1P61923 177 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 ADGRF1Q5T601 910 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 UBE2R2Q712K3 238 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-204ENST00000367248 ZNF461Q8TAF7 563 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 WFIKKN2Q8TEU8 576 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 ACDQ96AP0 544 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 H3BM21 787 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 LRATO95237 230 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 FECHP22830 423 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 DLG2Q15700 870 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 HECTD2Q5U5R9 776 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 LIPMQ5VYY2 423 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 PAGE2Q7Z2X7 111 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 LDB1Q86U70 411 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-204ENST00000367248 PLD3Q8IV08 490 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 RAD9AQ99638 391 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 ZDHHC4Q9NPG8 344 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 SIX4Q9UIU6 781 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 PRAMEF1O95521 474 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 COL6A2P12110 1019 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 FEN1P39748 380 aaKnown RBP11.56□□□□□ -0.56
SYNE1-204ENST00000367248 DSG1Q02413 1049 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 TAF13Q15543 124 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 ASTE1Q2TB18 679 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-204ENST00000367248 GPAT3Q53EU6 434 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 ANKRD22Q5VYY1 191 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 IQCKQ8N0W5 287 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 PCDH20Q8N6Y1 951 aaKnown RBP11.56□□□□□ -0.56
SYNE1-204ENST00000367248 ZSCAN18Q8TBC5 510 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-204ENST00000367248 STYXQ8WUJ0 223 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 BTRCQ9Y297 605 aa11.56□□□□□ -0.56
SYNE1-204ENST00000367248 URADA6NGE7 173 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 SRRM3A6NNA2 597 aaPredicted RBP11.55□□□□□ -0.56
SYNE1-204ENST00000367248 MT-CYBP00156 380 aaPredicted RBP11.55□□□□□ -0.56
SYNE1-204ENST00000367248 ASLP04424 464 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 TMED1Q13445 227 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 SH3PXD2AQ5TCZ1 1133 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms