RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 KLQ9UEF7 1012 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 POMPQ9Y244 141 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 H7C0C1 242 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 GFRA2O00451 464 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 PLOD2O00469 737 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 PER2O15055 1255 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 MAGEC1O60732 1142 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 CLIC3O95833 236 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 HMBSP08397 361 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 RHOQP17081 205 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 DDX6P26196 483 aaKnown RBP eCLIP10.12□□□□□ -0.79
SYNE1-203ENST00000354674 RBL1P28749 1068 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 HMOX2P30519 316 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 IFNA8P32881 189 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 ATP5OP48047 213 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 HARS2P49590 506 aaKnown RBP10.12□□□□□ -0.79
SYNE1-203ENST00000354674 PPP1R3AQ16821 1122 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 PUS10Q3MIT2 529 aaKnown RBP10.12□□□□□ -0.79
SYNE1-203ENST00000354674 GRAMD2AQ8IUY3 354 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 ARHGAP12Q8IWW6 846 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 TP53INP2Q8IXH6 220 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 FAM71DQ8N9W8 422 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 CALML6Q8TD86 181 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 TFB1MQ8WVM0 346 aaKnown RBP10.12□□□□□ -0.79
SYNE1-203ENST00000354674 RSAD2Q8WXG1 361 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 ARNTL2Q8WYA1 636 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 MRPS31Q92665 395 aaKnown RBP10.12□□□□□ -0.79
SYNE1-203ENST00000354674 ISOC1Q96CN7 298 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 HDAC11Q96DB2 347 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 TTC25Q96NG3 672 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 FERD3LQ96RJ6 166 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 CYP2S1Q96SQ9 504 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 CDCA3Q99618 268 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-203ENST00000354674 PRKD2Q9BZL6 878 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 SLC28A3Q9HAS3 691 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 GKN1Q9NS71 199 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 HCFC1R1Q9NWW0 138 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 THEGQ9P2T0 379 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 TAGLN3Q9UI15 199 aa10.12□□□□□ -0.79
SYNE1-203ENST00000354674 MTO1Q9Y2Z2 717 aaKnown RBP10.12□□□□□ -0.79
SYNE1-203ENST00000354674 HELZP42694 1942 aaKnown RBP10.11□□□□□ -0.79
SYNE1-203ENST00000354674 E2F8A0AVK6 867 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 CFAP99D6REC4 459 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 HNRNPCL1O60812 293 aaKnown RBP10.11□□□□□ -0.79
SYNE1-203ENST00000354674 GCATO75600 419 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 TACR2P21452 398 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 SLC6A4P31645 630 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 RPL22P35268 128 aaKnown RBP10.11□□□□□ -0.79
SYNE1-203ENST00000354674 RGS19P49795 217 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 CYP4F8P98187 520 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 CAV1Q03135 178 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 STAT4Q14765 748 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 NEDD8Q15843 81 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 HSF5Q4G112 596 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-203ENST00000354674 CEP78Q5JTW2 689 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 VWA5B1Q5TIE3 1220 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 C4orf22Q6V702 233 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 FAM217AQ8IXS0 508 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 UMODL1-AS1Q8N2C9 162 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 IGSF8Q969P0 613 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 WBP2Q969T9 261 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 ZYG11BQ9C0D3 744 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 EPB41L1Q9H4G0 881 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 STN1Q9H668 368 aaKnown RBP10.11□□□□□ -0.79
SYNE1-203ENST00000354674 ACSS2Q9NR19 701 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 DNAJC28Q9NX36 388 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 DNALI1O14645 258 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-203ENST00000354674 XYLBO75191 536 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 USP12O75317 370 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 UBL4AP11441 157 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 HDCP19113 662 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 JAK1P23458 1154 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 SLC11A2P49281 568 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 CDK9P50750 372 aaKnown RBP10.11□□□□□ -0.79
SYNE1-203ENST00000354674 NUP107P57740 925 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 RAP1GAP2Q684P5 730 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 RWDD4Q6NW29 188 aaKnown RBP10.11□□□□□ -0.79
SYNE1-203ENST00000354674 ZNF786Q8N393 782 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 PARP8Q8N3A8 854 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 ARL14EPQ8N8R7 260 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-203ENST00000354674 BBOF1Q8ND07 529 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 VN1R2Q8NFZ6 395 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 BORCS5Q969J3 196 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 MRPL38Q96DV4 380 aaKnown RBP10.11□□□□□ -0.79
SYNE1-203ENST00000354674 MYEOVQ96EZ4 313 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 TSGA13Q96PP4 275 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 PRDM12Q9H4Q4 367 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 Q9H521 79 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 AGO1Q9UL18 857 aaKnown RBP10.11□□□□□ -0.79
SYNE1-203ENST00000354674 VANGL2Q9ULK5 521 aa10.11□□□□□ -0.79
SYNE1-203ENST00000354674 FARP1Q9Y4F1 1045 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-203ENST00000354674 A0A1W2PRU2 124 aa10.1□□□□□ -0.79
SYNE1-203ENST00000354674 AIM2O14862 343 aa10.1□□□□□ -0.79
SYNE1-203ENST00000354674 FAM155BO75949 473 aa10.1□□□□□ -0.79
SYNE1-203ENST00000354674 MAP3K6O95382 1288 aa10.1□□□□□ -0.79
SYNE1-203ENST00000354674 RHOP08100 348 aa10.1□□□□□ -0.79
SYNE1-203ENST00000354674 MBL2P11226 248 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-203ENST00000354674 PSMC3P17980 439 aa10.1□□□□□ -0.79
SYNE1-203ENST00000354674 CORO1AP31146 461 aaKnown RBP10.1□□□□□ -0.79
SYNE1-203ENST00000354674 GARSP41250 739 aaKnown RBP10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms