RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 FAM46CQ5VWP2 391 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 ESRP1Q6NXG1 681 aaKnown RBP10.16□□□□□ -0.78
CHD3-201ENST00000330494 TTC27Q6P3X3 843 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.16□□□□□ -0.78
CHD3-201ENST00000330494 TRAPPC9Q96Q05 1148 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 AGAP2Q99490 1192 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 ADI1Q9BV57 179 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 PRRG3Q9BZD7 231 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 ACSS3Q9H6R3 686 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 TRIM24O15164 1050 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 SLC28A2O43868 658 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 CLDN11O75508 207 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 RPP40O75818 363 aaKnown RBP10.16□□□□□ -0.78
CHD3-201ENST00000330494 OTCP00480 354 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 EFNA1P20827 205 aaPredicted RBP10.16□□□□□ -0.78
CHD3-201ENST00000330494 ASPAP45381 313 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 ZNF280AP59817 542 aaPredicted RBP10.16□□□□□ -0.78
CHD3-201ENST00000330494 PSME3P61289 254 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 TAF13Q15543 124 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 CA9Q16790 459 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 TIGD5Q53EQ6 642 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 VSTM1Q6UX27 236 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 NPLOC4Q8TAT6 608 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 GPR21Q99679 349 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 RNF39Q9H2S5 420 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 SAR1AQ9NR31 198 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 ATAD3AQ9NVI7 634 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 ARL5AQ9Y689 179 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 KLHL18O94889 574 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 DRD4P21917 467 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 HNRNPH3P31942 346 aaKnown RBP10.16□□□□□ -0.78
CHD3-201ENST00000330494 RALGPS2Q86X27 583 aaPredicted RBP10.16□□□□□ -0.78
CHD3-201ENST00000330494 CPA6Q8N4T0 437 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 C9orf16Q9BUW7 83 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 CDH19Q9H159 772 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 PRDM16Q9HAZ2 1276 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 CLIC5Q9NZA1 410 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 CNOT6Q9ULM6 557 aaKnown RBP10.16□□□□□ -0.78
CHD3-201ENST00000330494 RAP2CQ9Y3L5 183 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 MYH10P35580 1976 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 PPEF2O14830 753 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 MYL12BO14950 172 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 KPNA5O15131 536 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 GABRB2P47870 512 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 NRLP54845 237 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 SPIBQ01892 262 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 PTSQ03393 145 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 CEP68Q76N32 757 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 DSELQ8IZU8 1212 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 ZNF655Q8N720 491 aaPredicted RBP10.16□□□□□ -0.78
CHD3-201ENST00000330494 ZNF557Q8N988 423 aaPredicted RBP10.16□□□□□ -0.78
CHD3-201ENST00000330494 TERB1Q8NA31 727 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 MTMR14Q8NCE2 650 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 CPT1BQ92523 772 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 TSSK3Q96PN8 268 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 CACNB4O00305 520 aaPredicted RBP10.16□□□□□ -0.78
CHD3-201ENST00000330494 RFXANKO14593 260 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 ALOX15BO15296 676 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 MAPK8P45983 427 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 RGS1Q08116 209 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 STX4Q12846 297 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 EPS8Q12929 822 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 MTAPQ13126 283 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 SLC1A5Q15758 541 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 SPESP1Q6UW49 350 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 DEF8Q6ZN54 512 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 ARHGAP36Q6ZRI8 547 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 KRT73Q86Y46 540 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 STK32AQ8WU08 396 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 VPS4AQ9UN37 437 aa10.16□□□□□ -0.78
CHD3-201ENST00000330494 A0A1W2PRU2 124 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 C2P06681 752 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 TSNQ15631 228 aaKnown RBP10.15□□□□□ -0.78
CHD3-201ENST00000330494 PARP15Q460N3 678 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 RNASEH2BQ5TBB1 312 aaKnown RBP10.15□□□□□ -0.78
CHD3-201ENST00000330494 ADAMTSL2Q86TH1 951 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 TMEM139Q8IV31 216 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 VANGL1Q8TAA9 524 aaPredicted RBP10.15□□□□□ -0.78
CHD3-201ENST00000330494 UBASH3BQ8TF42 649 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 ESAMQ96AP7 390 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 TEKT5Q96M29 485 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 PTPN18Q99952 460 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 MCMBPQ9BTE3 642 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 SPRTNQ9H040 489 aaPredicted RBP10.15□□□□□ -0.78
CHD3-201ENST00000330494 TXNRD2Q9NNW7 524 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 PSME2Q9UL46 239 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 PRR5-ARHGAP8B1AHC4 643 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 LGR5O75473 907 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 TSPAN19P0C672 248 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 ALAS2P22557 587 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 GDF10P55107 478 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 ARHGAP8P85298 464 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 COX10Q12887 443 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 TRIM32Q13049 653 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 SPDYCQ5MJ68 293 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 CTU1Q7Z7A3 348 aaKnown RBP10.15□□□□□ -0.78
CHD3-201ENST00000330494 FAM81AQ8TBF8 368 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 AGAP11Q8TF27 550 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 ATL1Q8WXF7 558 aa10.15□□□□□ -0.78
CHD3-201ENST00000330494 SPAG4Q9NPE6 437 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms