RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 RNF34Q969K3 372 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 PPM1MQ96MI6 270 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 ZNF347Q96SE7 839 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 MRPL57Q9BQC6 102 aaKnown RBP14.35□□□□□ -0.11
SDC1-201ENST00000254351 CYP3A43Q9HB55 503 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 HMG20AQ9NP66 347 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 SLC30A1Q9Y6M5 507 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 GNGT2O14610 69 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 AKAP5P24588 427 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 PIGAP37287 484 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 MTPNP58546 118 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 CDH17Q12864 832 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 FOXD4Q12950 439 aaPredicted RBP14.35□□□□□ -0.11
SDC1-201ENST00000254351 PPIL2Q13356 520 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 PAGE3Q5JUK9 113 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 CATSPER4Q7RTX7 472 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 PAGE2Q7Z2X7 111 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 RHNO1Q9BSD3 238 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 TEX13BQ9BXU2 312 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 TRIM15Q9C019 465 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 EML4Q9HC35 981 aaKnown RBP14.35□□□□□ -0.11
SDC1-201ENST00000254351 SEMA4BQ9NPR2 832 aaPredicted RBP14.35□□□□□ -0.11
SDC1-201ENST00000254351 SLCO3A1Q9UIG8 710 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 ANKRD6Q9Y2G4 727 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 FNDC3AQ9Y2H6 1198 aaKnown RBP14.35□□□□□ -0.11
SDC1-201ENST00000254351 DNAJC15Q9Y5T4 150 aa14.35□□□□□ -0.11
SDC1-201ENST00000254351 BRCA2P51587 3418 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 SYCE1LA8MT33 242 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 A8MV72 311 aaPredicted RBP14.34□□□□□ -0.11
SDC1-201ENST00000254351 GPX3P22352 226 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 NCS1P62166 190 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 ZNF846Q147U1 533 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 GALNT5Q7Z7M9 940 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 SLC22A17Q8WUG5 538 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 TOP1MTQ969P6 601 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 TMBIM1Q969X1 311 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 MAGED4Q96JG8 741 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 ZMAT2Q96NC0 199 aaKnown RBP14.34□□□□□ -0.11
SDC1-201ENST00000254351 TOR3AQ9H497 397 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 PDZD7Q9H5P4 517 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 MEAF6Q9HAF1 191 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 PALMDQ9NP74 551 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 SNTG2Q9NY99 539 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 FXYD1O00168 92 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 TMBIM6P55061 237 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 CATSPEREQ5SY80 951 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 OR7A2PQ8NGA2 310 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 CNIH3Q8TBE1 160 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 ADAMTS16Q8TE57 1224 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 RPL3LQ92901 407 aaKnown RBP14.34□□□□□ -0.11
SDC1-201ENST00000254351 BIRC7Q96CA5 298 aa14.34□□□□□ -0.11
SDC1-201ENST00000254351 MAP3K20Q9NYL2 800 aaKnown RBP14.34□□□□□ -0.11
SDC1-201ENST00000254351 ZBTB42B2RXF5 422 aa14.33□□□□□ -0.11
SDC1-201ENST00000254351 BMP4P12644 408 aa14.33□□□□□ -0.11
SDC1-201ENST00000254351 YBX3P16989 372 aaKnown RBP eCLIP14.33□□□□□ -0.11
SDC1-201ENST00000254351 MATKP42679 507 aa14.33□□□□□ -0.11
SDC1-201ENST00000254351 OR4D2P58180 307 aa14.33□□□□□ -0.11
SDC1-201ENST00000254351 ZNF280AP59817 542 aaPredicted RBP14.33□□□□□ -0.11
SDC1-201ENST00000254351 ITKQ08881 620 aa14.33□□□□□ -0.11
SDC1-201ENST00000254351 TRIM32Q13049 653 aa14.33□□□□□ -0.11
SDC1-201ENST00000254351 NOL9Q5SY16 702 aaKnown RBP14.33□□□□□ -0.11
SDC1-201ENST00000254351 FAM45BPQ6NSW5 357 aa14.33□□□□□ -0.11
SDC1-201ENST00000254351 MIER2Q8N344 545 aa14.33□□□□□ -0.11
SDC1-201ENST00000254351 FAM86B1Q8N7N1 296 aa14.33□□□□□ -0.11
SDC1-201ENST00000254351 FAM45AQ8TCE6 357 aa14.33□□□□□ -0.11
SDC1-201ENST00000254351 PABPC5Q96DU9 382 aaKnown RBP14.33□□□□□ -0.11
SDC1-201ENST00000254351 ZBED3Q96IU2 234 aaPredicted RBP14.33□□□□□ -0.11
SDC1-201ENST00000254351 SPATA33Q96N06 139 aa14.33□□□□□ -0.11
SDC1-201ENST00000254351 FSD1LQ9BXM9 530 aa14.33□□□□□ -0.11
SDC1-201ENST00000254351 NACA2Q9H009 215 aa14.33□□□□□ -0.11
SDC1-201ENST00000254351 FZD8Q9H461 694 aa14.33□□□□□ -0.11
SDC1-201ENST00000254351 VRTNQ9H8Y1 702 aa14.33□□□□□ -0.11
SDC1-201ENST00000254351 IGSF5Q9NSI5 407 aa14.33□□□□□ -0.11
SDC1-201ENST00000254351 DNMT3BQ9UBC3 853 aaKnown RBP14.33□□□□□ -0.11
SDC1-201ENST00000254351 FBXO5Q9UKT4 447 aa14.33□□□□□ -0.11
SDC1-201ENST00000254351 MGAMO43451 1857 aa14.33□□□□□ -0.12
SDC1-201ENST00000254351 ARID2Q68CP9 1835 aa14.33□□□□□ -0.12
SDC1-201ENST00000254351 ERI2A8K979 691 aaKnown RBP14.33□□□□□ -0.12
SDC1-201ENST00000254351 TBX1O43435 398 aa14.33□□□□□ -0.12
SDC1-201ENST00000254351 SNX2O60749 519 aa14.33□□□□□ -0.12
SDC1-201ENST00000254351 CLASP2O75122 1294 aaKnown RBP14.33□□□□□ -0.12
SDC1-201ENST00000254351 KRT75O95678 551 aa14.33□□□□□ -0.12
SDC1-201ENST00000254351 ARNTP27540 789 aa14.33□□□□□ -0.12
SDC1-201ENST00000254351 PSMB9P28065 219 aa14.33□□□□□ -0.12
SDC1-201ENST00000254351 MZF1P28698 734 aaPredicted RBP14.33□□□□□ -0.12
SDC1-201ENST00000254351 SERPINB1P30740 379 aa14.33□□□□□ -0.12
SDC1-201ENST00000254351 HOXD11P31277 338 aaPredicted RBP14.33□□□□□ -0.12
SDC1-201ENST00000254351 NOS2P35228 1153 aa14.33□□□□□ -0.12
SDC1-201ENST00000254351 GGT5P36269 586 aa14.33□□□□□ -0.12
SDC1-201ENST00000254351 ATP6V0D1P61421 351 aa14.33□□□□□ -0.12
SDC1-201ENST00000254351 COPZ1P61923 177 aa14.33□□□□□ -0.12
SDC1-201ENST00000254351 DPY19L1Q2PZI1 675 aa14.33□□□□□ -0.12
SDC1-201ENST00000254351 LARP4Q71RC2 724 aaKnown RBP eCLIP14.33□□□□□ -0.123e-8■□□□□ 10.4
SDC1-201ENST00000254351 SAMD7Q7Z3H4 446 aa14.33□□□□□ -0.12
SDC1-201ENST00000254351 FIG4Q92562 907 aa14.33□□□□□ -0.12
SDC1-201ENST00000254351 MROQ9BYG7 248 aa14.33□□□□□ -0.12
SDC1-201ENST00000254351 TP63Q9H3D4 680 aaPredicted RBP14.33□□□□□ -0.12
SDC1-201ENST00000254351 DDIT4Q9NX09 232 aa14.33□□□□□ -0.12
SDC1-201ENST00000254351 SNX5Q9Y5X3 404 aa14.33□□□□□ -0.12
SDC1-201ENST00000254351 SCN1AP35498 2009 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms