RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 BLMHQ13867 455 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 IKBKEQ14164 716 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 LSM12Q3MHD2 195 aaKnown RBP14.01□□□□□ -0.17
CPSF1-212ENST00000616140 GATAD2AQ86YP4 633 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 FSTL5Q8N475 847 aaPredicted RBP14.01□□□□□ -0.17
CPSF1-212ENST00000616140 HJURPQ8NCD3 748 aaPredicted RBP14.01□□□□□ -0.17
CPSF1-212ENST00000616140 FAM156AQ8NDB6 213 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 ZHX1-C8orf76Q96EF9 292 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 QRFPRQ96P65 431 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 ABCB10Q9NRK6 738 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 COL1A2P08123 1366 aa14.01□□□□□ -0.17
CPSF1-212ENST00000616140 CACNA1FO60840 1977 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 FAM149AA5PLN7 773 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 SOWAHBA6NEL2 793 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 CENPXA8MT69 81 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 SLC28A1O00337 649 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 TCF4P15884 667 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 LMO2P25791 158 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 ITGA1P56199 1179 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 CYP4F2P78329 520 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 CYP4F3Q08477 520 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 SFSWAPQ12872 951 aaKnown RBP14□□□□□ -0.17
CPSF1-212ENST00000616140 NR1D2Q14995 579 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 EIF3MQ7L2H7 374 aaKnown RBP14□□□□□ -0.17
CPSF1-212ENST00000616140 SPPL2BQ8TCT7 592 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 ZNF558Q96NG5 402 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 CCDC28BQ9BUN5 200 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 ARHGEF3Q9NR81 526 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 EHD3Q9NZN3 535 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 CFHP08603 1231 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 NMBRP28336 390 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 SPIDRQ14159 915 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 TAPT1Q6NXT6 567 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 CCDC149Q6ZUS6 474 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 DENND6AQ8IWF6 608 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 PCED1BQ96HM7 432 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 AGAP2Q99490 1192 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 HNRNPABQ99729 332 aaKnown RBP14□□□□□ -0.17
CPSF1-212ENST00000616140 EBF4Q9BQW3 602 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 OSBPL6Q9BZF3 934 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 SPATA2Q9UM82 520 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 SNX10Q9Y5X0 201 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 LYVE1Q9Y5Y7 322 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 KPNA5O15131 536 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 PMM2O15305 246 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 NDST3O95803 873 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 IL1R2P27930 398 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 GLYATQ6IB77 296 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 KIAA0408Q6ZU52 694 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 ZNF438Q7Z4V0 828 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 RALGPS2Q86X27 583 aaPredicted RBP14□□□□□ -0.17
CPSF1-212ENST00000616140 SHISA4Q96DD7 197 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 GPR21Q99679 349 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 CORO1BQ9BR76 489 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 PLGRKTQ9HBL7 147 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 DNAJC28Q9NX36 388 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 GMIPQ9P107 970 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 KAT6AQ92794 2004 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 VIRMAQ69YN4 1812 aaKnown RBP14□□□□□ -0.17
CPSF1-212ENST00000616140 BBIP1A8MTZ0 92 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 UGT1A9O60656 530 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 XYLBO75191 536 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 RPP40O75818 363 aaKnown RBP14□□□□□ -0.17
CPSF1-212ENST00000616140 CYP4B1P13584 511 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 TNNI3P19429 210 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 IFNGR2P38484 337 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 CLCNKBP51801 687 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 USP41Q3LFD5 358 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 ACSBG2Q5FVE4 666 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 C6orf52Q5T4I8 152 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 NEK10Q6ZWH5 1172 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 CNTD1Q8N815 330 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 MRPL48Q96GC5 212 aaKnown RBP14□□□□□ -0.17
CPSF1-212ENST00000616140 ACAT2Q9BWD1 397 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 UGT1A7Q9HAW7 530 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 UGT1A10Q9HAW8 530 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 UGT1A8Q9HAW9 530 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 MAGEL2Q9UJ55 1249 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 TMEM59LQ9UK28 342 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 PSME2Q9UL46 239 aa14□□□□□ -0.17
CPSF1-212ENST00000616140 YJEFN3A6XGL0 299 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 C1RP00736 705 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 CDC73Q6P1J9 531 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 RFWD3Q6PCD5 774 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 TAC4Q86UU9 113 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 CMASQ8NFW8 434 aaPredicted RBP13.99□□□□□ -0.17
CPSF1-212ENST00000616140 CLEC4CQ8WTT0 213 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 TWIST2Q8WVJ9 160 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 UBE2E3Q969T4 207 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 APOLD1Q96LR9 279 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 TSPAN18Q96SJ8 248 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 FZD8Q9H461 694 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 HMGXB4Q9UGU5 601 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 ADGRE2Q9UHX3 823 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 PADI3Q9ULW8 664 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.99□□□□□ -0.17
CPSF1-212ENST00000616140 NPEPPSL1A6NEC2 478 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 OR6C75A6NL08 312 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 E9PAM4 449 aa13.99□□□□□ -0.17
CPSF1-212ENST00000616140 YBEYP58557 167 aaPredicted RBP13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms