RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 ZNF682O95780 498 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 SMIM10L2AP0DMW4 78 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 SMIM10L2BP0DMW5 78 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 ODC1P11926 461 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 TNK2Q07912 1038 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 TWF1Q12792 350 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 FAM219BQ5XKK7 198 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 LZTR1Q8N653 840 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 BHMTQ93088 406 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 CHID1Q9BWS9 393 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 TAS2R13Q9NYV9 303 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 SCN9AQ15858 1988 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 SERPINB10P48595 397 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 SOX4Q06945 474 aaPredicted RBP12.59□□□□□ -0.39
LIG1-221ENST00000613670 TRAP1Q12931 704 aaKnown RBP12.59□□□□□ -0.39
LIG1-221ENST00000613670 FAM187BQ17R55 369 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 CPSF7Q8N684 471 aaKnown RBP12.59□□□□□ -0.39
LIG1-221ENST00000613670 TERB1Q8NA31 727 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 FNDC8Q8TC99 324 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 GPATCH1Q9BRR8 931 aaKnown RBP12.59□□□□□ -0.39
LIG1-221ENST00000613670 TRMOQ9BU70 441 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 KIFC1Q9BW19 673 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 COMMD8Q9NX08 183 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 ADAMTS5Q9UNA0 930 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 DERAQ9Y315 318 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 RNF11Q9Y3C5 154 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 PKP3Q9Y446 797 aa12.59□□□□□ -0.39
LIG1-221ENST00000613670 NRCAMQ92823 1304 aa12.58□□□□□ -0.39
LIG1-221ENST00000613670 ZNF487B1APH4 448 aa12.58□□□□□ -0.39
LIG1-221ENST00000613670 MAGP20916 626 aa12.58□□□□□ -0.39
LIG1-221ENST00000613670 PIK3CGP48736 1102 aa12.58□□□□□ -0.39
LIG1-221ENST00000613670 DIO3P55073 304 aa12.58□□□□□ -0.39
LIG1-221ENST00000613670 OVOS1Q6IE37 1185 aa12.58□□□□□ -0.39
LIG1-221ENST00000613670 KIAA2013Q8IYS2 634 aa12.58□□□□□ -0.39
LIG1-221ENST00000613670 STAG3L4Q8TBR4 150 aa12.58□□□□□ -0.39
LIG1-221ENST00000613670 CENPIQ92674 756 aaPredicted RBP12.58□□□□□ -0.39
LIG1-221ENST00000613670 LEF1Q9UJU2 399 aaPredicted RBP12.58□□□□□ -0.39
LIG1-221ENST00000613670 CLASP2O75122 1294 aaKnown RBP12.58□□□□□ -0.4
LIG1-221ENST00000613670 VPS26AO75436 327 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 SLC22A3O75751 556 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 RSL1D1O76021 490 aaKnown RBP12.58□□□□□ -0.4
LIG1-221ENST00000613670 SERPINB1P30740 379 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 CAPGP40121 348 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 TRPC1P48995 793 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 SNX17Q15036 470 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 ACAP2Q15057 778 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 PTPRNQ16849 979 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 FGD3Q5JSP0 725 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 AARS2Q5JTZ9 985 aaKnown RBP12.58□□□□□ -0.4
LIG1-221ENST00000613670 GPRIN1Q7Z2K8 1008 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 SMYD1Q8NB12 490 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 PPTC7Q8NI37 304 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 GPR152Q8TDT2 470 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 SLC9A7Q96T83 725 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 VTA1Q9NP79 307 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 IFT80Q9P2H3 777 aaPredicted RBP12.58□□□□□ -0.4
LIG1-221ENST00000613670 ZNF112Q9UJU3 913 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 AHDC1Q5TGY3 1603 aaPredicted RBP12.58□□□□□ -0.4
LIG1-221ENST00000613670 NFKBIEO00221 500 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 FFAR3O14843 346 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 STX7O15400 261 aaKnown RBP12.58□□□□□ -0.4
LIG1-221ENST00000613670 GPR42O15529 346 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 RAMP2O60895 175 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 SNAP29O95721 258 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 OR1E1P30953 314 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 CLCNKBP51801 687 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 MTPNP58546 118 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 DAB2P98082 770 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 GALNT2Q10471 571 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 GRB7Q14451 532 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 FSCN1Q16658 493 aaKnown RBP12.58□□□□□ -0.4
LIG1-221ENST00000613670 FAM45BPQ6NSW5 357 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 TMEM126BQ8IUX1 230 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 TBC1D21Q8IYX1 336 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 TOP6BLQ8N6T0 577 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 FAM45AQ8TCE6 357 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 NCSTNQ92542 709 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 LRRC58Q96CX6 371 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 B3GALT6Q96L58 329 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 NSUN5Q96P11 429 aaKnown RBP12.58□□□□□ -0.4
LIG1-221ENST00000613670 OLFM1Q99784 485 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 EPB41L1Q9H4G0 881 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 ZFP14Q9HCL3 533 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 SBF2Q86WG5 1849 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 SLX4Q8IY92 1834 aa12.58□□□□□ -0.4
LIG1-221ENST00000613670 COL5A3P25940 1745 aaPredicted RBP12.58□□□□□ -0.4
LIG1-221ENST00000613670 XIRP1Q702N8 1843 aaKnown RBP12.57□□□□□ -0.4
LIG1-221ENST00000613670 KPNA4O00629 521 aaPredicted RBP12.57□□□□□ -0.4
LIG1-221ENST00000613670 TREHO43280 583 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 DLGAP3O95886 979 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 IDO1P14902 403 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 ZNF26P17031 533 aaPredicted RBP12.57□□□□□ -0.4
LIG1-221ENST00000613670 EDNRBP24530 442 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 GABRB3P28472 473 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 GSK3BP49841 420 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 TSTD2Q5T7W7 516 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 RAP1GAP2Q684P5 730 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 PTRHD1Q6GMV3 140 aaKnown RBP12.57□□□□□ -0.4
LIG1-221ENST00000613670 LRRC8DQ7L1W4 858 aa12.57□□□□□ -0.4
LIG1-221ENST00000613670 LSMEM2Q8N112 164 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms