RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 ARMC12Q5T9G4 340 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 MARK2Q7KZI7 788 aaKnown RBP17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 TMPRSS9Q7Z410 1059 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 ZFAND4Q86XD8 727 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 KIAA1524Q8TCG1 905 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 TTC9Q92623 222 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 USP7Q93009 1102 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 NUP85Q9BW27 656 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 GSDMCQ9BYG8 508 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 THAP2Q9H0W7 228 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 ISCUQ9H1K1 167 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 TAAR2Q9P1P5 351 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 ANAPC7Q9UJX3 599 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 APPL1Q9UKG1 709 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 SUFUQ9UMX1 484 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 TMEM98Q9Y2Y6 226 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 PLEKHM1Q9Y4G2 1056 aa17.57■□□□□ 0.4
SHKBP1-223ENST00000600552 HELZ2Q9BYK8 2649 aaKnown RBP17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 TRBV23OR9-2A0A075B6M9 112 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 PRAMEF33A0A0G2JMD5 474 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 PRAMEF10O60809 474 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 PGLSO95336 258 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 MAP3K6O95382 1288 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 ECEL1O95672 775 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 PEX11BO96011 259 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 FUCA1P04066 466 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 FGF1P05230 155 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 CEACAM5P06731 702 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 LHCGRP22888 699 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 CCKBRP32239 447 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 SERPINB6P35237 376 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 GPR1P46091 355 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 CDK3Q00526 305 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 PIGHQ14442 188 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 NR1I3Q14994 352 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 VASH2Q86V25 355 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 NRROSQ86YC3 692 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 LRRN4Q8WUT4 740 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 PATE1Q8WXA2 126 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 JPH3Q8WXH2 748 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 DTD2Q96FN9 168 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 SEMA3CQ99985 751 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 ZMYND15Q9H091 742 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 IP6K2Q9UHH9 426 aa17.56■□□□□ 0.4
SHKBP1-223ENST00000600552 A0A1W2PQ67 120 aa17.55■□□□□ 0.4
SHKBP1-223ENST00000600552 B4GAT1O43505 415 aa17.55■□□□□ 0.4
SHKBP1-223ENST00000600552 PDHA1P08559 390 aa17.55■□□□□ 0.4
SHKBP1-223ENST00000600552 CD48P09326 243 aa17.55■□□□□ 0.4
SHKBP1-223ENST00000600552 CR2P20023 1033 aa17.55■□□□□ 0.4
SHKBP1-223ENST00000600552 EPHB1P54762 984 aa17.55■□□□□ 0.4
SHKBP1-223ENST00000600552 B4GALNT1Q00973 533 aa17.55■□□□□ 0.4
SHKBP1-223ENST00000600552 CCDC122Q5T0U0 273 aa17.55■□□□□ 0.4
SHKBP1-223ENST00000600552 NKAIN2Q5VXU1 208 aa17.55■□□□□ 0.4
SHKBP1-223ENST00000600552 USP45Q70EL2 814 aa17.55■□□□□ 0.4
SHKBP1-223ENST00000600552 TRIM74Q86UV6 250 aa17.55■□□□□ 0.4
SHKBP1-223ENST00000600552 PIM3Q86V86 326 aa17.55■□□□□ 0.4
SHKBP1-223ENST00000600552 RCBTB1Q8NDN9 531 aa17.55■□□□□ 0.4
SHKBP1-223ENST00000600552 GPBAR1Q8TDU6 330 aa17.55■□□□□ 0.4
SHKBP1-223ENST00000600552 CMKLR1Q99788 373 aa17.55■□□□□ 0.4
SHKBP1-223ENST00000600552 MGME1Q9BQP7 344 aa17.55■□□□□ 0.4
SHKBP1-223ENST00000600552 TEX101Q9BY14 249 aa17.55■□□□□ 0.4
SHKBP1-223ENST00000600552 PCDHGA7Q9Y5G6 932 aa17.55■□□□□ 0.4
SHKBP1-223ENST00000600552 AHCTF1Q8WYP5 2266 aa17.55■□□□□ 0.4
SHKBP1-223ENST00000600552 ZNF462Q96JM2 2506 aa17.55■□□□□ 0.4
SHKBP1-223ENST00000600552 INPP4BO15327 924 aa17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 EFSO43281 561 aa17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 NUDT21O43809 227 aaKnown RBP17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 ASMTLO95671 621 aa17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 PNLIPP16233 465 aa17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 MPSTP25325 297 aa17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 TPM4P67936 248 aa17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 FANCCQ00597 558 aa17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 CTBSQ01459 385 aa17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 ZFP36L1Q07352 338 aaKnown RBP17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 C16orf72Q14CZ0 275 aa17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 ATP13A4Q4VNC1 1196 aa17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 MANEAQ5SRI9 462 aa17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 ZFYVE27Q5T4F4 411 aa17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 CPNE8Q86YQ8 564 aa17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 NDUFAF2Q8N183 169 aa17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 AP2M1Q96CW1 435 aa17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 SCRN2Q96FV2 425 aa17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 WBP1Q96G27 269 aa17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 NUDT22Q9BRQ3 303 aa17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 ARHGAP9Q9BRR9 750 aa17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 FRMD8Q9BZ67 464 aaPredicted RBP17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 FOXJ2Q9P0K8 574 aa17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 AKAP7Q9P0M2 348 aaPredicted RBP17.54■□□□□ 0.4
SHKBP1-223ENST00000600552 SCN8AQ9UQD0 1980 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 PIEZO2Q9H5I5 2752 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 ATMQ13315 3056 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 CAPN8A6NHC0 703 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 MYO1FO00160 1098 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 MFSD11O43934 449 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 CPNE6O95741 557 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 CCL4P13236 92 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 ADCY8P40145 1251 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 ACTR1BP42025 376 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 ACTR1AP61163 376 aa17.53■□□□□ 0.4
SHKBP1-223ENST00000600552 DSC2Q02487 901 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms