RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 NFKBIL1Q9UBC1 381 aaPredicted RBP16.12■□□□□ 0.17
TRIM28-213ENST00000598355 U3KQA8 63 aa16.12■□□□□ 0.17
TRIM28-213ENST00000598355 ASPMQ8IZT6 3477 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 LOC285095A0A1B0GVY8 99 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 NEMP2A6NFY4 417 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 TPP1O14773 563 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 TNFRSF10CO14798 259 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 SIGLEC6O43699 453 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 HYAL3O43820 417 aaPredicted RBP16.11■□□□□ 0.17
TRIM28-213ENST00000598355 ACP1P24666 158 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 RBL1P28749 1068 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 CETN2P41208 172 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 BLKP51451 505 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 PPARDQ03181 441 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 CDK18Q07002 472 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 RFLNAQ6ZTI6 216 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 NYAP1Q6ZVC0 841 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 CDKL3Q8IVW4 592 aaPredicted RBP16.11■□□□□ 0.17
TRIM28-213ENST00000598355 KLHDC8BQ8IXV7 354 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 NRSN1Q8IZ57 195 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 ATL2Q8NHH9 583 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 PDXPQ96GD0 296 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 OXNAD1Q96HP4 312 aaPredicted RBP16.11■□□□□ 0.17
TRIM28-213ENST00000598355 WDR24Q96S15 920 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 GORASP1Q9BQQ3 440 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 MLPHQ9BV36 600 aaPredicted RBP16.11■□□□□ 0.17
TRIM28-213ENST00000598355 DUSP23Q9BVJ7 150 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 SCNM1Q9BWG6 230 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 LGR4Q9BXB1 951 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 FRMD8Q9BZ67 464 aaPredicted RBP16.11■□□□□ 0.17
TRIM28-213ENST00000598355 GBA3Q9H227 469 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 FGF22Q9HCT0 170 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 SPASTQ9UBP0 616 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 FAM153AQ9UHL3 310 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 TRHDEQ9UKU6 1024 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 GUCA1BQ9UMX6 200 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 NEUROG3Q9Y4Z2 214 aa16.11■□□□□ 0.17
TRIM28-213ENST00000598355 IGF2RP11717 2491 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 TMEM202A6NGA9 273 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 LMO7DNF2Z398 122 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 CACNB4O00305 520 aaPredicted RBP16.1■□□□□ 0.17
TRIM28-213ENST00000598355 GCATO75600 419 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 ZNF189O75820 626 aaPredicted RBP16.1■□□□□ 0.17
TRIM28-213ENST00000598355 RASGRP1O95267 797 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 CLDN7O95471 211 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 NDST3O95803 873 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 EPOP01588 193 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 RBP3P10745 1247 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 CKMT2P17540 419 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 KELP23276 732 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 EIF3EP60228 445 aaKnown RBP16.1■□□□□ 0.17
TRIM28-213ENST00000598355 CDK3Q00526 305 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 ILKQ13418 452 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 GALNT3Q14435 633 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 HENMT1Q5T8I9 393 aaKnown RBP16.1■□□□□ 0.17
TRIM28-213ENST00000598355 ADAMTSL4Q6UY14 1074 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 HEATR4Q86WZ0 1026 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 SDR16C5Q8N3Y7 309 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 PNPLA1Q8N8W4 532 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 OR56A4Q8NGH8 313 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 EID2BQ96D98 161 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 MRGPRX2Q96LB1 330 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 CLPBQ9H078 707 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 ABCG8Q9H221 673 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 USP29Q9HBJ7 922 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 MAGEE1Q9HCI5 957 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 KLHL8Q9P2G9 620 aaPredicted RBP16.1■□□□□ 0.17
TRIM28-213ENST00000598355 KLQ9UEF7 1012 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 WDFY3Q8IZQ1 3526 aa16.1■□□□□ 0.17
TRIM28-213ENST00000598355 C1orf232A0A0U1RR37 186 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 RGSL1A5PLK6 1076 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 GOLGA6L3A6NEY3 463 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 H7C0C1 242 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 FFAR2O15552 330 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 RFPL3O75679 317 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 ALPPL2P10696 532 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 CKMT1AP12532 417 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 ATP5OP48047 213 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 SPINT3P49223 89 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 WNT3AP56704 352 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 DCDC1P59894 354 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 SRP54P61011 504 aaKnown RBP16.09■□□□□ 0.17
TRIM28-213ENST00000598355 DNAJC3Q13217 504 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 MPP3Q13368 585 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 SMAD1Q15797 465 aaKnown RBP16.09■□□□□ 0.17
TRIM28-213ENST00000598355 PRRT3Q5FWE3 981 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 MEI1Q5TIA1 1274 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 CCDC181Q5TID7 509 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 DENND2CQ68D51 928 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 ZCCHC8Q6NZY4 707 aaKnown RBP16.09■□□□□ 0.17
TRIM28-213ENST00000598355 ENPP7Q6UWV6 458 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 LYSMD3Q7Z3D4 306 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 FSTL5Q8N475 847 aaPredicted RBP16.09■□□□□ 0.17
TRIM28-213ENST00000598355 CHCHD4Q8N4Q1 142 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 TTC13Q8NBP0 860 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 SLC35B2Q8TB61 432 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 OR1E3Q8WZA6 343 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 SCARF2Q96GP6 870 aaPredicted RBP16.09■□□□□ 0.17
TRIM28-213ENST00000598355 BOCQ9BWV1 1114 aa16.09■□□□□ 0.17
TRIM28-213ENST00000598355 SLC13A1Q9BZW2 595 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms