RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	BRCC3	P46736	316 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	NAGLU	P54802	743 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	MTTP	P55157	894 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	MS4A2	Q01362	244 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	SV2C	Q496J9	727 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	ARHGAP17	Q68EM7	881 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	ABRAXAS1	Q6UWZ7	409 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	LAYN	Q6UX15	382 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	ZDHHC17	Q8IUH5	632 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	MCU	Q8NE86	351 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	KLHDC9	Q8NEP7	349 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	DNAJB8	Q8NHS0	232 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	PXYLP1	Q8TE99	480 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	EGLN2	Q96KS0	407 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	SENP8	Q96LD8	212 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	NPAS2	Q99743	824 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	NUDT16L1	Q9BRJ7	211 aa	Known RBP	11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	ULBP1	Q9BZM6	244 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	EHD1	Q9H4M9	534 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	ELAC1	Q9H777	363 aa	Known RBP	11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	TRPS1	Q9UHF7	1281 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	C15orf38-AP3S2	A0A0A6YYH1	394 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	MYBPHL	A2RUH7	354 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063		H3BNX3	289 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	BIRC5	O15392	142 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	KLHL2	O95198	593 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	STAU1	O95793	577 aa	Known RBP	11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	PENK	P01210	267 aa	Predicted RBP	11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	USP17L7	P0C7H9	530 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	CCDC166	P0CW27	439 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	CDH3	P22223	829 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	MATK	P42679	507 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	ALDH1A3	P47895	512 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	CYTH1	Q15438	398 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	BCL2A1	Q16548	175 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	KYAT3	Q6YP21	454 aa	Known RBP	11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	DBX2	Q6ZNG2	339 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	CLEC20A	Q6ZU45	233 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	ARPIN	Q7Z6K5	226 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	STK32C	Q86UX6	486 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	RNF135	Q8IUD6	432 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	FBXW8	Q8N3Y1	598 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	PCDH20	Q8N6Y1	951 aa	Known RBP	11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	ICA1L	Q8NDH6	482 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	CERS2	Q96G23	380 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	DEFB118	Q96PH6	123 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	GHITM	Q9H3K2	345 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	ATXN3L	Q9H3M9	355 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	TASP1	Q9H6P5	420 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	DDX43	Q9NXZ2	648 aa	Known RBP	11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	DERA	Q9Y315	318 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	DTNA	Q9Y4J8	743 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	HNRNPCL2	B2RXH8	293 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	PQBP1	O60828	265 aa	Known RBP	11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	FKBP6	O75344	327 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	KCNE1	P15382	129 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	TSPAN8	P19075	237 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	TPSB2	P20231	275 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	HOXC8	P31273	242 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	OR1G1	P47890	313 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	SERPINB9	P50453	376 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	TKTL1	P51854	596 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	TPSAB1	Q15661	275 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	MOG	Q16653	247 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	RBM44	Q6ZP01	1051 aa	Known RBP	11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	ARC	Q7LC44	396 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	SPATA24	Q86W54	205 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	GRIN3A	Q8TCU5	1115 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	LZIC	Q8WZA0	190 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	TSNARE1	Q96NA8	513 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	TRAPPC9	Q96Q05	1148 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	GATA5	Q9BWX5	397 aa	Predicted RBP	11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	UPF3A	Q9H1J1	476 aa	Known RBP	11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	CRTAC1	Q9NQ79	661 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	GMPR2	Q9P2T1	348 aa	Known RBP	11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	TSC22D4	Q9Y3Q8	395 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	SF3B1	O75533	1304 aa	Known RBP eCLIP	11.62	□□□□□ -0.55	1e-11	■■■■■ 43.1
CDK5RAP3-231	ENST00000584063	SHROOM3	Q8TF72	1996 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063		A0A1W2PQ45	241 aa	Predicted RBP	11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063		A0A1W2PQY0	241 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	NEMP2	A6NFY4	417 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	PCP4L1	A6NKN8	68 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	ST8SIA5	O15466	376 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	C2	P06681	752 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	CKB	P12277	381 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	ERCC2	P18074	760 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	XPA	P23025	273 aa	Predicted RBP	11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	DPP6	P42658	865 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	SERINC3	Q13530	473 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	FBXO43	Q4G163	708 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	FCRLB	Q6BAA4	426 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	GRAMD4	Q6IC98	578 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	TMC7	Q7Z402	723 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	EPHX4	Q8IUS5	362 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	CMTM5	Q96DZ9	223 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	DCUN1D1	Q96GG9	259 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	CENPK	Q9BS16	269 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	C20orf96	Q9NUD7	363 aa	Predicted RBP	11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	NUDT5	Q9UKK9	219 aa		11.62	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	PRG3	Q9Y2Y8	225 aa	Predicted RBP	11.62	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms