RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 CREB5Q02930 508 aa22.77■■□□□ 1.24
VPS53-211ENST00000571805 SAMD4BQ5PRF9 694 aaKnown RBP22.77■■□□□ 1.24
VPS53-211ENST00000571805 MRNIPQ6NTE8 343 aa22.77■■□□□ 1.24
VPS53-211ENST00000571805 RYBPQ8N488 228 aaPredicted RBP22.77■■□□□ 1.24
VPS53-211ENST00000571805 BRSK1Q8TDC3 778 aa22.77■■□□□ 1.24
VPS53-211ENST00000571805 EXT2Q93063 718 aa22.77■■□□□ 1.24
VPS53-211ENST00000571805 FBXO32Q969P5 355 aa22.77■■□□□ 1.24
VPS53-211ENST00000571805 ARHGAP39Q9C0H5 1083 aa22.77■■□□□ 1.24
VPS53-211ENST00000571805 RRAGCQ9HB90 399 aa22.77■■□□□ 1.24
VPS53-211ENST00000571805 PLK2Q9NYY3 685 aa22.77■■□□□ 1.24
VPS53-211ENST00000571805 SQORQ9Y6N5 450 aa22.77■■□□□ 1.24
VPS53-211ENST00000571805 LRRC14BA6NHZ5 514 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 H0YJX3 145 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 H3BMM5 538 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 SRP72O76094 671 aaKnown RBP22.76■■□□□ 1.23
VPS53-211ENST00000571805 TNFAIP8O95379 198 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 CLPTM1O96005 669 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 HOXB8P17481 243 aaPredicted RBP22.76■■□□□ 1.23
VPS53-211ENST00000571805 GALNT3Q14435 633 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 C10orf120Q5SQS8 335 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 NADSYN1Q6IA69 706 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 RETREG3Q86VR2 466 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 RHEBL1Q8TAI7 183 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 EME1Q96AY2 570 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 ASB2Q96Q27 587 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 UHRF1Q96T88 793 aaPredicted RBP22.76■■□□□ 1.23
VPS53-211ENST00000571805 SEMA6AQ9H2E6 1030 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 HACD3Q9P035 362 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 APPL1Q9UKG1 709 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 SLC12A8A0AV02 714 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 C7orf72A4D263 438 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 UBXN8O00124 270 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 SLC7A1P30825 629 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 LAMB3Q13751 1172 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 USP41Q3LFD5 358 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 ROPN1LQ96C74 230 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 ATOH8Q96SQ7 321 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 SLC39A3Q9BRY0 314 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 COQ10BQ9H8M1 238 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 PDFQ9HBH1 243 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 OLA1Q9NTK5 396 aaKnown RBP22.76■■□□□ 1.23
VPS53-211ENST00000571805 AK5Q9Y6K8 562 aa22.76■■□□□ 1.23
VPS53-211ENST00000571805 PIRTP0C851 137 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 FOXA1P55317 472 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 TAF10Q12962 218 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 LSAMPQ13449 338 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 CYP2R1Q6VVX0 501 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 HERC6Q8IVU3 1022 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 METTL25Q8N6Q8 603 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 OR4L1Q8NH43 312 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 RIN3Q8TB24 985 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 LINC01599Q8WXQ3 324 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 ZNF597Q96LX8 424 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 GPATCH1Q9BRR8 931 aaKnown RBP22.75■■□□□ 1.23
VPS53-211ENST00000571805 MAP10Q9P2G4 905 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 NOD1Q9Y239 953 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 PTGDR2Q9Y5Y4 395 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 TANC1Q9C0D5 1861 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 CSPG5O95196 566 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 FAM58BPP0C7Q3 252 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 CALRP27797 417 aaKnown RBP22.75■■□□□ 1.23
VPS53-211ENST00000571805 MAPKAPK2P49137 400 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 SLC7A2P52569 658 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 STX1BP61266 288 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 IYDQ6PHW0 289 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 SLC24A5Q71RS6 500 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 PHYKPLQ8IUZ5 450 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 DGCR14Q96DF8 476 aaKnown RBP22.75■■□□□ 1.23
VPS53-211ENST00000571805 AARSD1Q9BTE6 412 aaKnown RBP22.75■■□□□ 1.23
VPS53-211ENST00000571805 MRPS26Q9BYN8 205 aaKnown RBP22.75■■□□□ 1.23
VPS53-211ENST00000571805 TFB2MQ9H5Q4 396 aaKnown RBP22.75■■□□□ 1.23
VPS53-211ENST00000571805 MID1IP1Q9NPA3 183 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 CATSPERZQ9NTU4 200 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 GMPR2Q9P2T1 348 aaKnown RBP22.75■■□□□ 1.23
VPS53-211ENST00000571805 GIMAP2Q9UG22 337 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 RIMKLBQ9ULI2 386 aa22.75■■□□□ 1.23
VPS53-211ENST00000571805 AZIN1O14977 448 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 OGNP20774 298 aaKnown RBP22.74■■□□□ 1.23
VPS53-211ENST00000571805 STC1P52823 247 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 ZNF235Q14590 738 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 PFKFB4Q16877 469 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 CTXN3Q4LDR2 81 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 KANK2Q63ZY3 851 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 NSUN5Q96P11 429 aaKnown RBP22.74■■□□□ 1.23
VPS53-211ENST00000571805 TRIB3Q96RU7 358 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 TLR8Q9NR97 1041 aaKnown RBP22.74■■□□□ 1.23
VPS53-211ENST00000571805 GREB1Q4ZG55 1949 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 A0A0J9YYE9 177 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 PIP5K1BO14986 540 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 PRSS56P0CW18 603 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 FAM189BP81408 668 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 RING1Q06587 406 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 IKBKEQ14164 716 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 MRPL58Q14197 206 aaKnown RBP22.74■■□□□ 1.23
VPS53-211ENST00000571805 GRB7Q14451 532 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 NRF1Q16656 503 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 TYSND1Q2T9J0 566 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 HMBOX1Q6NT76 420 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 TWIST2Q8WVJ9 160 aa22.74■■□□□ 1.23
VPS53-211ENST00000571805 LRCH3Q96II8 777 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms