RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	MAP7	Q14244	749 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	CYTH1	Q15438	398 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	CCDC40	Q4G0X9	1142 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	ACBD5	Q5T8D3	534 aa	Predicted RBP	11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	TRNP1	Q6NT89	227 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	JMJD6	Q6NYC1	403 aa	Predicted RBP	11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	LIPI	Q6XZB0	460 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	CAMK1D	Q8IU85	385 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	NCSTN	Q92542	709 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	CFAP57	Q96MR6	1250 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	SLC38A3	Q99624	504 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	SLC25A23	Q9BV35	468 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	SCAND2P	Q9GZW5	306 aa	Predicted RBP	11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	TRNAU1AP	Q9NX07	287 aa	Known RBP	11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	LHX3	Q9UBR4	397 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	OR12D3	Q9UGF7	316 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	CFAP45	Q9UL16	551 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	F8	P00451	2351 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	HIVEP3	Q5T1R4	2406 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232		A6NCN8	305 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	INPP4B	O15327	924 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	P4HA2	O15460	535 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	MYCLP1	P12525	358 aa	Predicted RBP	11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	RHOQ	P17081	205 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	ACTR1B	P42025	376 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	MAPKAPK2	P49137	400 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	CCL11	P51671	97 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	ACTR1A	P61163	376 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	APBA1	Q02410	837 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	FOXM1	Q08050	763 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	PNOC	Q13519	176 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	NAA30	Q147X3	362 aa	Predicted RBP	11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	C2CD6	Q53TS8	623 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	MANEAL	Q5VSG8	457 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	WDR74	Q6RFH5	385 aa	Predicted RBP	11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	BNIPL	Q7Z465	357 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	SLC47A2	Q86VL8	602 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	SLC34A3	Q8N130	599 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	DOCK4	Q8N1I0	1966 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	TTC13	Q8NBP0	860 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	OR10G6	Q8NH81	332 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	HCAR2	Q8TDS4	363 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	RUFY1	Q96T51	708 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	FRMD8	Q9BZ67	464 aa	Predicted RBP	11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	SLC29A3	Q9BZD2	475 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	NOL6	Q9H6R4	1146 aa	Known RBP	11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	MLXIPL	Q9NP71	852 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	SLAMF7	Q9NQ25	335 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	TMEM248	Q9NWD8	314 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	PCDHGC3	Q9UN70	934 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	NEU3	Q9UQ49	428 aa		11.73	□□□□□ -0.53
CLK3-222	ENST00000568232	PDE2A	O00408	941 aa	Predicted RBP	11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	HNRNPR	O43390	633 aa	Known RBP	11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	KIAA0754	O94854	1291 aa		11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	MAP3K6	O95382	1288 aa		11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	CBX6	O95503	412 aa		11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	EML2	O95834	649 aa		11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	ELFN1	P0C7U0	828 aa		11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	MAPK9	P45984	424 aa		11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	LRRC63	Q05C16	580 aa		11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	PKP1	Q13835	747 aa		11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	ACOX1	Q15067	660 aa		11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	INO80D	Q53TQ3	878 aa	Predicted RBP	11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	CFAP58	Q5T655	872 aa		11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	FAM102A	Q5T9C2	384 aa	Predicted RBP	11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	BRAT1	Q6PJG6	821 aa		11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	LYSMD3	Q7Z3D4	306 aa		11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	SLC37A2	Q8TED4	501 aa		11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	STAMBPL1	Q96FJ0	436 aa		11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	ELMO2	Q96JJ3	720 aa		11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	GOLPH3L	Q9H4A5	285 aa		11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	SIDT1	Q9NXL6	827 aa	Known RBP	11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	TACC2	O95359	2948 aa		11.72	□□□□□ -0.53
CLK3-222	ENST00000568232	FAM237A	A0A1B0GTK4	181 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	CFAP69	A5D8W1	941 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	ARGFX	A6NJG6	315 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	LRIG2	O94898	1065 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	CASP14	P31944	242 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	FASLG	P48023	281 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	LEPR	P48357	1165 aa	Known RBP	11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	SH3BP2	P78314	561 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	ATP11A	P98196	1134 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	NFATC2	Q13469	925 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	DNASE1L3	Q13609	305 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	KRTAP21-3	Q3LHN1	58 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	ZNF658	Q5TYW1	1059 aa	Predicted RBP	11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	AFMID	Q63HM1	303 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	ATL3	Q6DD88	541 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	DOK6	Q6PKX4	331 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	XYLT1	Q86Y38	959 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	DNAAF5	Q86Y56	855 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	ZDHHC17	Q8IUH5	632 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	MCEMP1	Q8IX19	187 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	CT55	Q8WUE5	264 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	CASKIN2	Q8WXE0	1202 aa		11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	SNRNP40	Q96DI7	357 aa	Known RBP	11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	ZNF641	Q96N77	438 aa	Predicted RBP	11.71	□□□□□ -0.53
CLK3-222	ENST00000568232	RANBP9	Q96S59	729 aa		11.71	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 116.2 ms