RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 KLHL3Q9UH77 587 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 HOOK1Q9UJC3 728 aaKnown RBP7.32□□□□□ -1.24
VPS4A-203ENST00000564399 SUFUQ9UMX1 484 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 CTNND2Q9UQB3 1225 aa7.32□□□□□ -1.24
VPS4A-203ENST00000564399 TMEM184BQ9Y519 407 aaPredicted RBP7.32□□□□□ -1.24
VPS4A-203ENST00000564399 SETD2Q9BYW2 2564 aaPredicted RBP7.32□□□□□ -1.24
VPS4A-203ENST00000564399 ZGRF1Q86YA3 2104 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 PIPSLA2A3N6 862 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 GOLGA6L4A6NEF3 574 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 RASA4BC9J798 803 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 FOXN3O00409 490 aaPredicted RBP7.31□□□□□ -1.24
VPS4A-203ENST00000564399 RASA4O43374 803 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 DLGAP3O95886 979 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 FUCA1P04066 466 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 PDGFAP04085 211 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 CEACAM5P06731 702 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 FURINP09958 794 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 PNMA6AP0CW24 399 aaPredicted RBP7.31□□□□□ -1.24
VPS4A-203ENST00000564399 F8A1P23610 371 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 EPHB2P29323 1055 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 SERPINA4P29622 427 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 SDC4P31431 198 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 ADCY8P40145 1251 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 MAPK9P45984 424 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 YBEYP58557 167 aaPredicted RBP7.31□□□□□ -1.24
VPS4A-203ENST00000564399 POLR2LP62875 67 aaKnown RBP7.31□□□□□ -1.24
VPS4A-203ENST00000564399 FOXM1Q08050 763 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 RALGDSQ12967 914 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 EXOC3L4Q17RC7 722 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 C15orf59Q2T9L4 293 aaPredicted RBP7.31□□□□□ -1.24
VPS4A-203ENST00000564399 TAF3Q5VWG9 929 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 DENND2CQ68D51 928 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 DOK6Q6PKX4 331 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 BNIPLQ7Z465 357 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 ARHGAP22Q7Z5H3 698 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 SRLQ86TD4 932 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 ZSWIM9Q86XI8 627 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 FMR1NBQ8N0W7 255 aaPredicted RBP7.31□□□□□ -1.24
VPS4A-203ENST00000564399 NUS1Q96E22 293 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 TUBGCP5Q96RT8 1024 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 ULBP3Q9BZM4 244 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 TWSG1Q9GZX9 223 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 NOL6Q9H6R4 1146 aaKnown RBP7.31□□□□□ -1.24
VPS4A-203ENST00000564399 ATP13A3Q9H7F0 1226 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 GDPD2Q9HCC8 539 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 METTL5Q9NRN9 209 aaKnown RBP7.31□□□□□ -1.24
VPS4A-203ENST00000564399 PDP2Q9P2J9 529 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 TMEM59LQ9UK28 342 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 DNAJC12Q9UKB3 198 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 OAS3Q9Y6K5 1087 aaKnown RBP7.31□□□□□ -1.24
VPS4A-203ENST00000564399 POLEQ07864 2286 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 NAV3Q8IVL0 2385 aa7.31□□□□□ -1.24
VPS4A-203ENST00000564399 ZNF106Q9H2Y7 1883 aaKnown RBP7.3□□□□□ -1.24
VPS4A-203ENST00000564399 SPTBP11277 2137 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 MED13LQ71F56 2210 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 A6NCN8 305 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 DNAJB5O75953 348 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 MAP3K6O95382 1288 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 FGFR1OPO95684 399 aaKnown RBP7.3□□□□□ -1.24
VPS4A-203ENST00000564399 CLDN1O95832 211 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 GM2AP17900 193 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 POU3F2P20265 443 aaPredicted RBP7.3□□□□□ -1.24
VPS4A-203ENST00000564399 POLD2P49005 469 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 PGDP52209 483 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 PMS2P54278 862 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 BCL2L1Q07817 233 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 MRPL49Q13405 166 aaKnown RBP7.3□□□□□ -1.24
VPS4A-203ENST00000564399 MAP7Q14244 749 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 INPP5JQ15735 1006 aaPredicted RBP7.3□□□□□ -1.24
VPS4A-203ENST00000564399 NADK2Q4G0N4 442 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 AFMIDQ63HM1 303 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 RAET1GQ6H3X3 334 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 WDR74Q6RFH5 385 aaPredicted RBP7.3□□□□□ -1.24
VPS4A-203ENST00000564399 C6orf15Q6UXA7 325 aaPredicted RBP7.3□□□□□ -1.24
VPS4A-203ENST00000564399 DPPA4Q7L190 304 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 TMEM135Q86UB9 458 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 TICAM1Q8IUC6 712 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 CCDC185Q8N715 623 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 RTL3Q8N8U3 475 aaKnown RBP7.3□□□□□ -1.24
VPS4A-203ENST00000564399 GALNT6Q8NCL4 622 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 PTCD2Q8WV60 388 aaKnown RBP7.3□□□□□ -1.24
VPS4A-203ENST00000564399 RXFP2Q8WXD0 754 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 CPA5Q8WXQ8 436 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 SNX21Q969T3 373 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 STAMBPL1Q96FJ0 436 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 OR2M4Q96R27 311 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 TEX101Q9BY14 249 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 FRMD8Q9BZ67 464 aaPredicted RBP7.3□□□□□ -1.24
VPS4A-203ENST00000564399 SLC29A3Q9BZD2 475 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 STN1Q9H668 368 aaKnown RBP7.3□□□□□ -1.24
VPS4A-203ENST00000564399 KCND3Q9UK17 655 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 AJAP1Q9UKB5 411 aaPredicted RBP7.3□□□□□ -1.24
VPS4A-203ENST00000564399 CROTQ9UKG9 612 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 MAN1B1Q9UKM7 699 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 NEU3Q9UQ49 428 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 PLEKHM1Q9Y4G2 1056 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 MAP4K5Q9Y4K4 846 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 ATP6V1DQ9Y5K8 247 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 ST14Q9Y5Y6 855 aa7.3□□□□□ -1.24
VPS4A-203ENST00000564399 PKDREJQ9NTG1 2253 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms