RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 MARK2Q7KZI7 788 aaKnown RBP12.81□□□□□ -0.36
CLK3-214ENST00000564096 TSPAN33Q86UF1 283 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 SLC26A11Q86WA9 606 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.81□□□□□ -0.36
CLK3-214ENST00000564096 CNTN4Q8IWV2 1026 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 CBARPQ8N350 705 aaPredicted RBP12.81□□□□□ -0.36
CLK3-214ENST00000564096 AADATQ8N5Z0 425 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 OR13C4Q8NGS5 318 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 HMGB4Q8WW32 186 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 ZNF778Q96MU6 729 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 FCRL3Q96P31 734 aaPredicted RBP12.81□□□□□ -0.36
CLK3-214ENST00000564096 PLEKHG4BQ96PX9 1271 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 UHRF1Q96T88 793 aaPredicted RBP12.81□□□□□ -0.36
CLK3-214ENST00000564096 PAFAH2Q99487 392 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 TTC1Q99614 292 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 TMEM109Q9BVC6 243 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 CHRDQ9H2X0 955 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 CATSPERZQ9NTU4 200 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 ZNF446Q9NWS9 450 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 FBXL12Q9NXK8 326 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 KCTD5Q9NXV2 234 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 IL17CQ9P0M4 197 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 VPS18Q9P253 973 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 SLC2A6Q9UGQ3 507 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 RABGEF1Q9UJ41 708 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 VPS9D1Q9Y2B5 631 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 SLC30A1Q9Y6M5 507 aa12.81□□□□□ -0.36
CLK3-214ENST00000564096 GLYATL1P3A0A0U1RQE8 302 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 SMIM23A6NLE4 172 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 POC1B-GALNT4F8VUJ3 575 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 DCXO43602 365 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 BUD23O43709 281 aaKnown RBP12.8□□□□□ -0.36
CLK3-214ENST00000564096 PRAMEF1O95521 474 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 GOT2P00505 430 aaKnown RBP12.8□□□□□ -0.36
CLK3-214ENST00000564096 SHBGP04278 402 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 ERVK-10P10266 1014 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 C7P10643 843 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 OGNP20774 298 aaKnown RBP12.8□□□□□ -0.36
CLK3-214ENST00000564096 PSMA3P25788 255 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 MC4RP32245 332 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 DRD3P35462 400 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 PPARGP37231 505 aaPredicted RBP12.8□□□□□ -0.36
CLK3-214ENST00000564096 METAP1P53582 386 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 RALGDSQ12967 914 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 ITGA9Q13797 1035 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 CDKN3Q16667 212 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 ZNF284Q2VY69 593 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 TMEM52BQ4KMG9 183 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 FASTKD1Q53R41 847 aaKnown RBP12.8□□□□□ -0.36
CLK3-214ENST00000564096 HSP90AA5PQ58FG0 334 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 UBAP2Q5T6F2 1119 aaKnown RBP12.8□□□□□ -0.36
CLK3-214ENST00000564096 LGSNQ5TDP6 509 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 KIAA1161Q6NSJ0 714 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 NEPROQ6NW34 567 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 SDCCAG8Q86SQ7 713 aaPredicted RBP12.8□□□□□ -0.36
CLK3-214ENST00000564096 IQCKQ8N0W5 287 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 PGBD3Q8N328 593 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 SPEM1Q8N4L4 309 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 PPM1NQ8N819 430 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 OR2W6PQ8NHA6 318 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 HDAC10Q969S8 669 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 CDKN2AIPNLQ96HQ2 116 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 SGSM3Q96HU1 749 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 MRGPRX1Q96LB2 322 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 SMIM14Q96QK8 99 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 CPNE1Q99829 537 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 PLAC1Q9HBJ0 212 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 CD248Q9HCU0 757 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 PREBQ9HCU5 417 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 IARS2Q9NSE4 1012 aaKnown RBP12.8□□□□□ -0.36
CLK3-214ENST00000564096 NFKBIL1Q9UBC1 381 aaPredicted RBP12.8□□□□□ -0.36
CLK3-214ENST00000564096 FKBPLQ9UIM3 349 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 ZNF180Q9UJW8 692 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 ITM2BQ9Y287 266 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 FNDC3AQ9Y2H6 1198 aaKnown RBP12.8□□□□□ -0.36
CLK3-214ENST00000564096 SIT1Q9Y3P8 196 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 MTF2Q9Y483 593 aaPredicted RBP12.8□□□□□ -0.36
CLK3-214ENST00000564096 KCTD3Q9Y597 815 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 FADS3Q9Y5Q0 445 aa12.8□□□□□ -0.36
CLK3-214ENST00000564096 F5P12259 2224 aa12.79□□□□□ -0.36
CLK3-214ENST00000564096 IQANK1A0A1B0GTG1 560 aa12.79□□□□□ -0.36
CLK3-214ENST00000564096 CCDC162PA2VCL2 907 aa12.79□□□□□ -0.36
CLK3-214ENST00000564096 A8MX80 341 aa12.79□□□□□ -0.36
CLK3-214ENST00000564096 WNT9AO14904 365 aa12.79□□□□□ -0.36
CLK3-214ENST00000564096 PLRG1O43660 514 aaKnown RBP12.79□□□□□ -0.36
CLK3-214ENST00000564096 LZTS3O60299 673 aaPredicted RBP12.79□□□□□ -0.36
CLK3-214ENST00000564096 KRT38O76015 456 aa12.79□□□□□ -0.36
CLK3-214ENST00000564096 APBB3O95704 486 aa12.79□□□□□ -0.36
CLK3-214ENST00000564096 C1SP09871 688 aa12.79□□□□□ -0.36
CLK3-214ENST00000564096 GABRG2P18507 467 aa12.79□□□□□ -0.36
CLK3-214ENST00000564096 CNTFP26441 200 aa12.79□□□□□ -0.36
CLK3-214ENST00000564096 ARNTP27540 789 aa12.79□□□□□ -0.36
CLK3-214ENST00000564096 PMLP29590 882 aa12.79□□□□□ -0.36
CLK3-214ENST00000564096 GP5P40197 560 aa12.79□□□□□ -0.36
CLK3-214ENST00000564096 ARCN1P48444 511 aaKnown RBP12.79□□□□□ -0.36
CLK3-214ENST00000564096 SPINT3P49223 89 aa12.79□□□□□ -0.36
CLK3-214ENST00000564096 SERPINB9P50453 376 aa12.79□□□□□ -0.36
CLK3-214ENST00000564096 CSE1LP55060 971 aaKnown RBP12.79□□□□□ -0.36
CLK3-214ENST00000564096 CACNG1Q06432 222 aa12.79□□□□□ -0.36
CLK3-214ENST00000564096 EFTUD2Q15029 972 aaKnown RBP eCLIP12.79□□□□□ -0.365e-7■■■□□ 19.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms