RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 NCKIPSDQ9NZQ3 722 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 B4GALT6Q9UBX8 382 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 ARHGAP26Q9UNA1 814 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 ARIH1Q9Y4X5 557 aaPredicted RBP9.24□□□□□ -0.93
VPS39-205ENST00000562258 DOCK1Q14185 1865 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 EDDM13A0A1B0GTR0 161 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 IDSP22304 550 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 GRIA2P42262 883 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 GABRB2P47870 512 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 PHEXP78562 749 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 CREB5Q02930 508 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 CPSF6Q16630 551 aaKnown RBP eCLIP9.24□□□□□ -0.93
VPS39-205ENST00000562258 PPP4R4Q6NUP7 873 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 MSANTD2Q6P1R3 559 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 UNC5BQ8IZJ1 945 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 PPFIBP2Q8ND30 876 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 LINGO1Q96FE5 620 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 FAR2Q96K12 515 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 HPS4Q9NQG7 708 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 GNPTGQ9UJJ9 305 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 TET1Q8NFU7 2136 aa9.24□□□□□ -0.93
VPS39-205ENST00000562258 FOXO6A8MYZ6 492 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 ANKRD66B4E2M5 251 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 FAM189A1O60320 539 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 AKT2P31751 481 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 GNPDA1P46926 289 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 PPIDQ08752 370 aaKnown RBP9.23□□□□□ -0.93
VPS39-205ENST00000562258 SERINC3Q13530 473 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 SEMA5AQ13591 1074 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 SF1Q15637 639 aaKnown RBP9.23□□□□□ -0.93
VPS39-205ENST00000562258 DCAF12L1Q5VU92 463 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 TRMT10BQ6PF06 316 aaKnown RBP9.23□□□□□ -0.93
VPS39-205ENST00000562258 NPAS3Q8IXF0 933 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 SLC2A13Q96QE2 648 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 HHIPQ96QV1 700 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 GPR21Q99679 349 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 NMRAL1Q9HBL8 299 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 MID1IP1Q9NPA3 183 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 FZD3Q9NPG1 666 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 TMEM98Q9Y2Y6 226 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 TMEM63AO94886 807 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 FTH1P02794 183 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 RPN2P04844 631 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 PKMP14618 531 aaKnown RBP9.23□□□□□ -0.93
VPS39-205ENST00000562258 TNNI3P19429 210 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 TFF2Q03403 129 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 FSCBQ5H9T9 825 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 ZNF662Q6ZS27 426 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 RPLP0P6Q8NHW5 317 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 COL26A1Q96A83 441 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 RTP3Q9BQQ7 232 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 POLR3BQ9NW08 1133 aaPredicted RBP9.23□□□□□ -0.93
VPS39-205ENST00000562258 OSER1Q9NX31 292 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 OPTCQ9UBM4 332 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 SLC24A2Q9UI40 661 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 ZFP69BQ9UJL9 534 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 TRIM33Q9UPN9 1127 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 TCRBV7S3A2A0A539 114 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 PSMD12O00232 456 aaPredicted RBP9.23□□□□□ -0.93
VPS39-205ENST00000562258 RPP40O75818 363 aaKnown RBP9.23□□□□□ -0.93
VPS39-205ENST00000562258 HAUS5O94927 633 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 GOT2P00505 430 aaKnown RBP9.23□□□□□ -0.93
VPS39-205ENST00000562258 ANXA5P08758 320 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 ENO3P13929 434 aaPredicted RBP9.23□□□□□ -0.93
VPS39-205ENST00000562258 ITPKAP23677 461 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 NTSR1P30989 418 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 CPA2P48052 419 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 FBXW4P57775 412 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 LRRC32Q14392 662 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 PM20D1Q6GTS8 502 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 SLC43A3Q8NBI5 491 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 BRSK1Q8TDC3 778 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 ASZ1Q8WWH4 475 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 MTBPQ96DY7 904 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 WDR26Q9H7D7 661 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 LRRC4CQ9HCJ2 640 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 SH3BP4Q9P0V3 963 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 CAPN7Q9Y6W3 813 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 LAMA4Q16363 1823 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 SMAD6O43541 496 aaKnown RBP9.23□□□□□ -0.93
VPS39-205ENST00000562258 SIN3BO75182 1162 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 ITGA2BP08514 1039 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 VAV1P15498 845 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 PIK3CGP48736 1102 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 PTP4A2Q12974 167 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 MAP7Q14244 749 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 SNX30Q5VWJ9 437 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 LRRC66Q68CR7 880 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 PARM1Q6UWI2 310 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 MILR1Q7Z6M3 343 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 TERB1Q8NA31 727 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 CHST14Q8NCH0 376 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 MAFAQ8NHW3 353 aaPredicted RBP9.23□□□□□ -0.93
VPS39-205ENST00000562258 AGAP2Q99490 1192 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 KDM4CQ9H3R0 1056 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 RC3H2Q9HBD1 1191 aaKnown RBP9.23□□□□□ -0.93
VPS39-205ENST00000562258 RAD18Q9NS91 495 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 SLC17A6Q9P2U8 582 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 KLQ9UEF7 1012 aa9.23□□□□□ -0.93
VPS39-205ENST00000562258 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms