RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 RSBN1Q5VWQ0 802 aaPredicted RBP13.31□□□□□ -0.28
CLK3-206ENST00000562078 SLCO6A1Q86UG4 719 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 CAMK1DQ8IU85 385 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.31□□□□□ -0.28
CLK3-206ENST00000562078 MPP5Q8N3R9 675 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 SNX31Q8N9S9 440 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 SGCDQ92629 289 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 YME1L1Q96TA2 773 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 GMPR2Q9P2T1 348 aaKnown RBP13.31□□□□□ -0.28
CLK3-206ENST00000562078 IPPQ9Y573 584 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 MYO18AQ92614 2054 aaKnown RBP13.31□□□□□ -0.28
CLK3-206ENST00000562078 TDRD15B5MCY1 1934 aaKnown RBP13.31□□□□□ -0.28
CLK3-206ENST00000562078 FAM159BA6NKW6 160 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 KPNA7A9QM74 516 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 PIRO00625 290 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 AXIN1O15169 862 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 PAPSS1O43252 624 aaPredicted RBP13.31□□□□□ -0.28
CLK3-206ENST00000562078 PRPSAP2O60256 369 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 TPST1O60507 370 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 XYLBO75191 536 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 KCNK2O95069 426 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 NADKO95544 446 aaPredicted RBP13.31□□□□□ -0.28
CLK3-206ENST00000562078 ELK4P28324 431 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 CASP3P42574 277 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 CRYBB1P53674 252 aaPredicted RBP13.31□□□□□ -0.28
CLK3-206ENST00000562078 GALK2Q01415 458 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 RFTN1Q14699 578 aaPredicted RBP13.31□□□□□ -0.28
CLK3-206ENST00000562078 CCDC14Q49A88 953 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 TJAP1Q5JTD0 557 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 STXBP5Q5T5C0 1151 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 NXNQ6DKJ4 435 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 TWF2Q6IBS0 349 aaKnown RBP13.31□□□□□ -0.28
CLK3-206ENST00000562078 SCYL2Q6P3W7 929 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 CRTC3Q6UUV7 619 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 LYPD8Q6UX82 237 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 NPNTQ6UXI9 565 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 PIGZQ86VD9 579 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 TTC30BQ8N4P2 665 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 ARRDC4Q8NCT1 418 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 SLC35F5Q8WV83 523 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 VPS33AQ96AX1 596 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 HDAC11Q96DB2 347 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 ZNF560Q96MR9 790 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 EPS8L2Q9H6S3 715 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 WDR70Q9NW82 654 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 GPATCH2LQ9NWQ4 482 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 WARS2Q9UGM6 360 aaKnown RBP13.31□□□□□ -0.28
CLK3-206ENST00000562078 SLCO3A1Q9UIG8 710 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 TESMINQ9Y4I5 508 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 APOC4-APOC2K7ER74 178 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 CD4P01730 458 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 APOC2P02655 101 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 CHRNGP07510 517 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 TFE3P19532 575 aaPredicted RBP13.3□□□□□ -0.28
CLK3-206ENST00000562078 MPSTP25325 297 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 LMO2P25791 158 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 CCR10P46092 362 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 SLC6A3Q01959 620 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 HERC3Q15034 1050 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 SLX4IPQ5VYV7 408 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 TIFABQ6ZNK6 161 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 ERMP1Q7Z2K6 904 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 UNC93AQ86WB7 457 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 COLGALT2Q8IYK4 626 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 LGI2Q8N0V4 545 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 SPATA18Q8TC71 538 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 CLEC4CQ8WTT0 213 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 MAGED4Q96JG8 741 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 DHRS9Q9BPW9 319 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 EFHD1Q9BUP0 239 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 FUNDC2Q9BWH2 189 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 RSAD1Q9HA92 442 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 BOLA1Q9Y3E2 137 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 SPEF1Q9Y4P9 236 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 TBKBP1A7MCY6 615 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 KCNU1A8MYU2 1149 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 TADA2AO75478 443 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 MFN2O95140 757 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 MYCP01106 439 aaPredicted RBP13.3□□□□□ -0.28
CLK3-206ENST00000562078 CTSHP09668 335 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 SDC4P31431 198 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 ACLYP53396 1101 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 STX1BP61266 288 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 C6orf10Q5SRN2 563 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 ZCCHC8Q6NZY4 707 aaKnown RBP13.3□□□□□ -0.28
CLK3-206ENST00000562078 NEK5Q6P3R8 708 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 DARS2Q6PI48 645 aaKnown RBP13.3□□□□□ -0.28
CLK3-206ENST00000562078 ZNF773Q6PK81 442 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 PRR23CQ6ZRP0 262 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 SLC16A12Q6ZSM3 486 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 CACTIN-AS1Q8N1I8 211 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.3□□□□□ -0.28
CLK3-206ENST00000562078 SMG8Q8ND04 991 aaKnown RBP13.3□□□□□ -0.28
CLK3-206ENST00000562078 SEPT8Q92599 483 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 PBXIP1Q96AQ6 731 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 FKBP10Q96AY3 582 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 OR2B2Q9GZK3 357 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 CLPBQ9H078 707 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 ZBTB26Q9HCK0 441 aa13.3□□□□□ -0.28
CLK3-206ENST00000562078 FKBP14Q9NWM8 211 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms