RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 V9GYQ6 96 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 SIX3O95343 332 aaPredicted RBP13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 GFAPP14136 432 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 NCK1P16333 377 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 SLC6A2P23975 617 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 EEF1B2P24534 225 aaKnown RBP13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 CAPGP40121 348 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 HERVK_113P63132 956 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 BNIP3Q12983 259 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 ZNF829Q3KNS6 432 aaPredicted RBP13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 UGT3A2Q3SY77 523 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 FUT11Q495W5 492 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 XKR4Q5GH76 650 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 UBXN11Q5T124 520 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 TMEM207Q6UWW9 146 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 RAB44Q7Z6P3 723 aaPredicted RBP13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 VPS50Q96JG6 964 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 COX4I2Q96KJ9 171 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 ERVK-6Q9BXR3 956 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 CATSPERBQ9H7T0 1116 aa13.97□□□□□ -0.17
VPS9D1-202ENST00000561976 MT-ND1P03886 318 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 FCGR1AP12314 374 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 HGFP14210 728 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 SMPD1P17405 629 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 CD247P20963 164 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 VARSP26640 1264 aaKnown RBP13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 DCKP27707 260 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 CASP2P42575 452 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 SERPINH1P50454 418 aaKnown RBP13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 CCR3P51677 355 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 NFYCQ13952 458 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 SNX17Q15036 470 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 TWF2Q6IBS0 349 aaKnown RBP13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 BHLHA9Q7RTU4 235 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 ANKRD13AQ8IZ07 590 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 TERB1Q8NA31 727 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 ZBTB8BQ8NAP8 495 aaPredicted RBP13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 TBC1D15Q8TC07 691 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 KCNA7Q96RP8 456 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 BTRCQ9Y297 605 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 LRRC14BA6NHZ5 514 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 FXYD1O00168 92 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 AZIN1O14977 448 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 ACOX3O15254 700 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 SNAP91O60641 907 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 CDK14O94921 469 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 ZBTB11O95625 1053 aaPredicted RBP13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 GPIP06744 558 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 LINC00032P0C843 101 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 UGT1A1P22309 533 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 UGT1A4P22310 534 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 UGT1A3P35503 534 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 UGT1A5P35504 534 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 MAGEA8P43361 318 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 RPS9P46781 194 aaKnown RBP13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 LHX1P48742 406 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 FOXA1P55317 472 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 PCBP1Q15365 356 aaKnown RBP eCLIP13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 ZNF792Q3KQV3 632 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 TIGD7Q6NT04 549 aaPredicted RBP13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 SPRED1Q7Z699 444 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 CILP2Q8IUL8 1156 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 PTERQ96BW5 349 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 SMARCD1Q96GM5 515 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 PLEKHA8Q96JA3 519 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 KCTD14Q9BQ13 255 aaPredicted RBP13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 RGS18Q9NS28 235 aa13.96□□□□□ -0.17
VPS9D1-202ENST00000561976 MYLKQ15746 1914 aa13.96□□□□□ -0.18
VPS9D1-202ENST00000561976 OR51F1A6NGY5 319 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 HHLA1C9JL84 531 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 PTGESO14684 152 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 ZBTB7AO95365 584 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 SNAP29O95721 258 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 MOCS2O96007 188 aaPredicted RBP13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 OCM2P0CE71 109 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 OCMP0CE72 109 aaPredicted RBP13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 SMIM10L2AP0DMW4 78 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 SMIM10L2BP0DMW5 78 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 LBPP18428 481 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 MAP4P27816 1152 aaKnown RBP13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 CD97P48960 835 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 TRAF2Q12933 501 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 PFKFB4Q16877 469 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 RABL3Q5HYI8 236 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 ZNF354CQ86Y25 554 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 SMG8Q8ND04 991 aaKnown RBP13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 SH3RF2Q8TEC5 729 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 SEPHS2Q99611 448 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 TSPYL2Q9H2G4 693 aaPredicted RBP13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 ALG2Q9H553 416 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 DOLKQ9UPQ8 538 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 TANC1Q9C0D5 1861 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 TRIM64A6NGJ6 449 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 CLASP2O75122 1294 aaKnown RBP13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 PAGE1O75459 146 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 CRCPO75575 148 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 APLP1P51693 650 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 MAXP61244 160 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 SLC14A2Q15849 920 aa13.95□□□□□ -0.18
VPS9D1-202ENST00000561976 OGFOD2Q6N063 350 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms