RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	SUFU	Q9UMX1	484 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	CHKB	Q9Y259	395 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	PCDHB2	Q9Y5E7	798 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	STYXL1	Q9Y6J8	313 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	USH1C	Q9Y6N9	552 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	SCIN	Q9Y6U3	715 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	PLXNB2	O15031	1838 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	CLUH	O75153	1309 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	PTPRJ	Q12913	1337 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	hCG_1818297	A0A087WSY0	165 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858		A0A0B4J269	797 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	EXOC1L	A0A1B0GW35	172 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	DENND3	A2RUS2	1198 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	GOLGA8IP	A6NC78	632 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	C3orf70	A6NLC5	250 aa	Predicted RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	GOLGA8J	A6NMD2	632 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	YDJC	A8MPS7	323 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	RASA4B	C9J798	803 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858		F5H697	171 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858		H0YCG3	227 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	QSOX1	O00391	747 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	TM9SF1	O15321	606 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	RASA4	O43374	803 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	EXTL3	O43909	919 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	TOM1	O60784	492 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	AGFG2	O95081	481 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	NXPH3	O95157	252 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	ZWINT	O95229	277 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	FKBP9	O95302	570 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	VNN1	O95497	513 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	ANP32D	O95626	131 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	LSM8	O95777	96 aa	Known RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	CCNE2	O96020	404 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	HLA-DRA	P01903	254 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	DHRS4L1	P0CG22	281 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	TPBGL	P0DKB5	382 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	T-ENOL	P0DO92	83 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	TGFB3	P10600	412 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	MTHFD2	P13995	350 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	PECAM1	P16284	738 aa	Predicted RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	GM2A	P17900	193 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	ATP6V1C1	P21283	382 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	CALB2	P22676	271 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	MMP8	P22894	467 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	GLRA2	P23416	452 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	PAX7	P23759	505 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	TBXAS1	P24557	533 aa	Predicted RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	CNGA1	P29973	690 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	YWHAB	P31946	246 aa	Known RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	PIK3CA	P42336	1068 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	CDKN2B	P42772	138 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	MAGEA4	P43358	317 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	NSF	P46459	744 aa	Known RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	ALDH9A1	P49189	494 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	NEK3	P51956	506 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	VCP	P55072	806 aa	Known RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	PEX3	P56589	373 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	NANOS2	P60321	138 aa	Known RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	PSMC5	P62195	406 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	UBXN2A	P68543	259 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	NOP14	P78316	857 aa	Known RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	HTRA4	P83105	476 aa	Predicted RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	SLC25A11	Q02978	314 aa	Known RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	PPARD	Q03181	441 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	RNASEL	Q05823	741 aa	Known RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	CDK18	Q07002	472 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	DNAJC3	Q13217	504 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	MAMLD1	Q13495	774 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	TUBB3	Q13509	450 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	SNX1	Q13596	522 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	MTMR1	Q13613	665 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	CUL2	Q13617	745 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	NAA25	Q14CX7	972 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	FASTKD3	Q14CZ7	662 aa	Known RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	PGM5	Q15124	567 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	PKN2	Q16513	984 aa	Known RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	KYNU	Q16719	465 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	KLHL38	Q2WGJ6	581 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	P3H1	Q32P28	736 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	BRDT	Q58F21	947 aa	Predicted RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	SLC45A4	Q5BKX6	768 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	XKR9	Q5GH70	373 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	AARS2	Q5JTZ9	985 aa	Known RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	LIN9	Q5TKA1	542 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	PLA2G4F	Q68DD2	849 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	ANKRD16	Q6P6B7	361 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	CCDC174	Q6PII3	467 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	C18orf65	Q6ZTR6	163 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	FAM47E	Q6ZV65	393 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	BBS12	Q6ZW61	710 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	ZNF365	Q70YC5	407 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	FKBP9P1	Q75LS8	142 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	ANO5	Q75V66	913 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	NLRP9	Q7RTR0	991 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	OTOA	Q7RTW8	1153 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	PNMA8A	Q86V59	439 aa	Predicted RBP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	2.54	□□□□□ -2
SPG11-223	ENST00000560858	ABRA	Q8N0Z2	381 aa		2.54	□□□□□ -2
SPG11-223	ENST00000560858	SPICE1	Q8N0Z3	855 aa		2.54	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms