RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 MLLT10P55197 1068 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 MADCAM1Q13477 382 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 PDCD4Q53EL6 469 aaKnown RBP11.33□□□□□ -0.6
LDLR-208ENST00000558518 C9orf57Q5W0N0 161 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 RAB44Q7Z6P3 723 aaPredicted RBP11.33□□□□□ -0.6
LDLR-208ENST00000558518 DSG4Q86SJ6 1040 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 KIAA2013Q8IYS2 634 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 ZCCHC7Q8N3Z6 543 aaKnown RBP11.33□□□□□ -0.6
LDLR-208ENST00000558518 SNX19Q92543 992 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 CAMKK2Q96RR4 588 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 THUMPD3Q9BV44 507 aaKnown RBP11.33□□□□□ -0.6
LDLR-208ENST00000558518 EIF2B3Q9NR50 452 aaKnown RBP11.33□□□□□ -0.6
LDLR-208ENST00000558518 ATP11BQ9Y2G3 1177 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 TCRBV3S1A0A5B6 114 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 KRBA1A5PL33 1030 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 HTR3EA5X5Y0 456 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.33□□□□□ -0.6
LDLR-208ENST00000558518 ENPP3O14638 875 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 TRIM24O15164 1050 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 C22orf31O95567 290 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 DLGAP3O95886 979 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 ACADSBP45954 432 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 SH3BP2P78314 561 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 IL5RAQ01344 420 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 GSTM4Q03013 218 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 SLC13A2Q13183 592 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 TWF2Q6IBS0 349 aaKnown RBP11.33□□□□□ -0.6
LDLR-208ENST00000558518 CYS1Q717R9 158 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 AGBL3Q8NEM8 1001 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 FLAD1Q8NFF5 587 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 TNIP3Q96KP6 325 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 TEKT5Q96M29 485 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 NDFIP2Q9NV92 336 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 USP3Q9Y6I4 520 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 TTC3P53804 2025 aa11.33□□□□□ -0.6
LDLR-208ENST00000558518 IGKV6D-21A0A0A0MT36 114 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 KANSL1LA0AUZ9 987 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 RBM47A0AV96 593 aaKnown RBP11.32□□□□□ -0.6
LDLR-208ENST00000558518 NADKO95544 446 aaPredicted RBP11.32□□□□□ -0.6
LDLR-208ENST00000558518 LGALS2P05162 132 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 FSHRP23945 695 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 SHMT2P34897 504 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 ADCYAP1R1P41586 468 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 MCCD1P59942 119 aaPredicted RBP11.32□□□□□ -0.6
LDLR-208ENST00000558518 TUBA4AP68366 448 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 CCNA1P78396 465 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 TNK2Q07912 1038 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 HERC3Q15034 1050 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 AAK1Q2M2I8 961 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 HECTD2Q5U5R9 776 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 MAMDC4Q6UXC1 1216 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 OSTM1Q86WC4 334 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 ANKRD13AQ8IZ07 590 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 LRRC58Q96CX6 371 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 C17orf80Q9BSJ5 609 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 MAP10Q9P2G4 905 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 LIMD1Q9UGP4 676 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 INVSQ9Y283 1065 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 ZNF638Q14966 1978 aaKnown RBP11.32□□□□□ -0.6
LDLR-208ENST00000558518 A0A1B0GTL3 188 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 MAGEB16A2A368 324 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 MYO1GB0I1T2 1018 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 PSMD11O00231 422 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 CYP2C8P10632 490 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 NPR3P17342 541 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 CA8P35219 290 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 CD86P42081 329 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 DGKQP52824 942 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 UFM1P61960 85 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 TTLL4Q14679 1199 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 SPCS2Q15005 226 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 SFRP1Q8N474 314 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 FNDC5Q8NAU1 212 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 CHST13Q8NET6 341 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 TEX37Q96LM6 180 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 NSMCE2Q96MF7 247 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 NEURL2Q9BR09 285 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 COLEC11Q9BWP8 271 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 CCM2LQ9NUG4 571 aaPredicted RBP11.32□□□□□ -0.6
LDLR-208ENST00000558518 GJD2Q9UKL4 321 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 PADI4Q9UM07 663 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 MYBPHLA2RUH7 354 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 CCDC154A6NI56 674 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 DCLK1O15075 740 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 SNX2O60749 519 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 PRKAA2P54646 552 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 VBP1P61758 197 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 GTF2H3Q13889 308 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 SIM2Q14190 667 aaPredicted RBP11.32□□□□□ -0.6
LDLR-208ENST00000558518 PYCR3Q53H96 274 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 TMTC4Q5T4D3 741 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 FKBP1CQ5VVH2 108 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 SLC2A7Q6PXP3 512 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 ZDHHC17Q8IUH5 632 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 CDYL2Q8N8U2 506 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 CORO1BQ9BR76 489 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 TMEM181Q9P2C4 612 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 POU2F3Q9UKI9 436 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 DNAJC15Q9Y5T4 150 aa11.32□□□□□ -0.6
LDLR-208ENST00000558518 BPTFQ12830 3046 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms