RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 A6NLC8 198 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 HNRNPA1P09651 372 aaKnown RBP eCLIP3.14□□□□□ -1.91
SCFD1-218ENST00000556256 STX2P32856 288 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 GJC1P36383 396 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 MPP1Q00013 466 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 TBL3Q12788 808 aaKnown RBP3.14□□□□□ -1.91
SCFD1-218ENST00000556256 IL13RA2Q14627 380 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 BAK1Q16611 211 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 PRICKLE4Q2TBC4 344 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 HEATR4Q86WZ0 1026 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 TSPYL6Q8N831 410 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 SETD9Q8NE22 299 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 SLC20A1Q8WUM9 679 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 ZNF689Q96CS4 500 aaPredicted RBP3.14□□□□□ -1.91
SCFD1-218ENST00000556256 MPP4Q96JB8 637 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 LRR1Q96L50 414 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 SEC62Q99442 399 aaKnown RBP3.14□□□□□ -1.91
SCFD1-218ENST00000556256 ASCL2Q99929 193 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 FUZQ9BT04 418 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 LRRC1Q9BTT6 524 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 CTDSP1Q9GZU7 261 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 WDR13Q9H1Z4 485 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 TAOK3Q9H2K8 898 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 CYSLTR2Q9NS75 346 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 HCFC1R1Q9NWW0 138 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 OGFRQ9NZT2 677 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 TBX20Q9UMR3 447 aa3.14□□□□□ -1.91
SCFD1-218ENST00000556256 FAF1Q9UNN5 650 aaPredicted RBP3.14□□□□□ -1.91
SCFD1-218ENST00000556256 ZNF318Q5VUA4 2279 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 SH2D7A6NKC9 451 aaPredicted RBP3.13□□□□□ -1.91
SCFD1-218ENST00000556256 PEX12O00623 359 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 DVL1O14640 695 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 PLRG1O43660 514 aaKnown RBP3.13□□□□□ -1.91
SCFD1-218ENST00000556256 SH3BP5O60239 455 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 RGS11O94810 467 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 INHBAP08476 426 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 XBP1P17861 261 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 HNRNPH1P31943 449 aaKnown RBP3.13□□□□□ -1.91
SCFD1-218ENST00000556256 DDIT3P35638 169 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 HNF1BP35680 557 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 DVL1P1P54792 670 aaPredicted RBP3.13□□□□□ -1.91
SCFD1-218ENST00000556256 HDAC4P56524 1084 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 BYSLQ13895 437 aaKnown RBP3.13□□□□□ -1.91
SCFD1-218ENST00000556256 RUNDC3AQ59EK9 446 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 SH2D4BQ5SQS7 431 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 SLC9C2Q5TAH2 1124 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 NAA35Q5VZE5 725 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 GJB7Q6PEY0 223 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 LRRC8DQ7L1W4 858 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 P2RY8Q86VZ1 359 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 PCYOX1LQ8NBM8 494 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 FAM222BQ8WU58 562 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 ST8SIA4Q92187 359 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 HVCN1Q96D96 273 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 ZBTB10Q96DT7 871 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 ELP4Q96EB1 424 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 CDCA5Q96FF9 252 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 UNC45AQ9H3U1 944 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 PDZD7Q9H5P4 517 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 CCDC177Q9NQR7 707 aaPredicted RBP3.13□□□□□ -1.91
SCFD1-218ENST00000556256 TMEM30AQ9NV96 361 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 NDRG3Q9UGV2 375 aa3.13□□□□□ -1.91
SCFD1-218ENST00000556256 B4E171 279 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 SERPINC1P01008 464 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 IGLV1-44P01699 117 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 CD4P01730 458 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 ITGA2P17301 1181 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 CHRNB4P30926 498 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 TSPAN7P41732 249 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 ARSFP54793 590 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 ARHGAP8P85298 464 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 G3BP1Q13283 466 aaKnown RBP eCLIP3.12□□□□□ -1.91
SCFD1-218ENST00000556256 SIM2Q14190 667 aaPredicted RBP3.12□□□□□ -1.91
SCFD1-218ENST00000556256 TCTE1Q5JU00 501 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 CCNYL2Q5T2Q4 361 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 SLC27A1Q6PCB7 646 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 KRBA2Q6ZNG9 492 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 KCTD8Q6ZWB6 473 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.12□□□□□ -1.91
SCFD1-218ENST00000556256 KMT5CQ86Y97 462 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 PAF1Q8N7H5 531 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 ANKRD52Q8NB46 1076 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 STAMQ92783 540 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 ERGIC1Q969X5 290 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 SH3KBP1Q96B97 665 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 RRP36Q96EU6 259 aaKnown RBP3.12□□□□□ -1.91
SCFD1-218ENST00000556256 TRIM15Q9C019 465 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 LMAN2LQ9H0V9 348 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 JMJD4Q9H9V9 463 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 SLC25A10Q9UBX3 287 aaPredicted RBP3.12□□□□□ -1.91
SCFD1-218ENST00000556256 CYP46A1Q9Y6A2 500 aa3.12□□□□□ -1.91
SCFD1-218ENST00000556256 COL5A2P05997 1499 aaPredicted RBP3.11□□□□□ -1.91
SCFD1-218ENST00000556256 GOLGA6L10A0A0M3HER8 536 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 SMIM1B2RUZ4 78 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 HHLA1C9JL84 531 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 ANP32CO43423 234 aa3.11□□□□□ -1.91
SCFD1-218ENST00000556256 EPB41L2O43491 1005 aaKnown RBP3.11□□□□□ -1.91
SCFD1-218ENST00000556256 WDHD1O75717 1129 aaPredicted RBP3.11□□□□□ -1.91
SCFD1-218ENST00000556256 IFIT1P09914 478 aaKnown RBP3.11□□□□□ -1.91
SCFD1-218ENST00000556256 ATP1A3P13637 1013 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms