RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 CACNB2Q08289 660 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-207ENST00000553837 CTBP1Q13363 440 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 PRPSAP1Q14558 356 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 NR1D2Q14995 579 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 TRIM71Q2Q1W2 868 aaKnown RBP12.26□□□□□ -0.45
SHMT2-207ENST00000553837 LSM12Q3MHD2 195 aaKnown RBP12.26□□□□□ -0.45
SHMT2-207ENST00000553837 BTBD8Q5XKL5 378 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 CCSAPQ6IQ19 270 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-207ENST00000553837 PKN3Q6P5Z2 889 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 RTN4RL1Q86UN2 441 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-207ENST00000553837 SLC41A1Q8IVJ1 513 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 ZNF786Q8N393 782 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 PNPLA1Q8N8W4 532 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 DUS3LQ96G46 650 aaKnown RBP12.26□□□□□ -0.45
SHMT2-207ENST00000553837 FCRL5Q96RD9 977 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 UHRF1Q96T88 793 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-207ENST00000553837 UNKQ9C0B0 810 aaKnown RBP12.26□□□□□ -0.45
SHMT2-207ENST00000553837 SMOC2Q9H3U7 446 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 NOL6Q9H6R4 1146 aaKnown RBP12.26□□□□□ -0.45
SHMT2-207ENST00000553837 WDR55Q9H6Y2 383 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-207ENST00000553837 SUCOQ9UBS9 1254 aaKnown RBP12.26□□□□□ -0.45
SHMT2-207ENST00000553837 SEPT3Q9UH03 358 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 HS3ST4Q9Y661 456 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 A0A1W2PPW3 197 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 TRIM64BA6NI03 449 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 KCNU1A8MYU2 1149 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 FAM47E-STBD1D6RA91 191 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 PLOD2O00469 737 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 MATN3O15232 486 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 SEPT4O43236 478 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 TRIM13O60858 407 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 VAPBO95292 243 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 PARNO95453 639 aaKnown RBP12.26□□□□□ -0.45
SHMT2-207ENST00000553837 SLC35E2BP0CK96 405 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 SLC7A1P30825 629 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 FLT3LGP49771 235 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 PRAMEP78395 509 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 DMPKQ09013 629 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 TRAP1Q12931 704 aaKnown RBP12.26□□□□□ -0.45
SHMT2-207ENST00000553837 IHHQ14623 411 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 GPR107Q5VW38 600 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 AFMIDQ63HM1 303 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 SEL1L3Q68CR1 1132 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 ANKRD26P1Q6NSI1 321 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 RGMBQ6NW40 437 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 BEND5Q7L4P6 421 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 SPATA2LQ8IUW3 424 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-207ENST00000553837 HERC6Q8IVU3 1022 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 CEP97Q8IW35 865 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 CENPLQ8N0S6 344 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-207ENST00000553837 SPATA6LQ8N4H0 392 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 KCTD4Q8WVF5 259 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 STON2Q8WXE9 905 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 CCDC138Q96M89 665 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 CIB1Q99828 191 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 C1orf50Q9BV19 199 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 NOL11Q9H8H0 719 aaKnown RBP12.26□□□□□ -0.45
SHMT2-207ENST00000553837 ABCC13Q9NSE7 274 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 OXSMQ9NWU1 459 aa12.26□□□□□ -0.45
SHMT2-207ENST00000553837 TRIM64A6NGJ6 449 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 KPNA4O00629 521 aaPredicted RBP12.25□□□□□ -0.45
SHMT2-207ENST00000553837 NEMP1O14524 444 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 AURKAO14965 403 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 AKAP10O43572 662 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 NOL3O60936 208 aaKnown RBP12.25□□□□□ -0.45
SHMT2-207ENST00000553837 PMPCBO75439 489 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 ENDOUP21128 410 aaKnown RBP12.25□□□□□ -0.45
SHMT2-207ENST00000553837 MPSTP25325 297 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 CCR1P32246 355 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 PSMD8P48556 350 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 NKX3-2P78367 333 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 ZNF33AQ06730 810 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 BNIP3Q12983 259 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 ANO4Q32M45 955 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 SLC39A12Q504Y0 691 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 MTX3Q5HYI7 312 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 FGD3Q5JSP0 725 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 PCID2Q5JVF3 399 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 BRMS1LQ5PSV4 323 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 PIK3R6Q5UE93 754 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 FRA10AC1Q70Z53 315 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 SCN4BQ8IWT1 228 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 COLGALT2Q8IYK4 626 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 PACRGLQ8N7B6 248 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 ANKFN1Q8N957 763 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 PBXIP1Q96AQ6 731 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 TMA16Q96EY4 203 aaKnown RBP12.25□□□□□ -0.45
SHMT2-207ENST00000553837 MRGPRX2Q96LB1 330 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 ACE2Q9BYF1 805 aaPredicted RBP12.25□□□□□ -0.45
SHMT2-207ENST00000553837 RHOJQ9H4E5 214 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 ZNF385DQ9H6B1 395 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 ZBTB26Q9HCK0 441 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 RBM22Q9NW64 420 aaKnown RBP eCLIP12.25□□□□□ -0.458e-10■■■■■ 40.7
SHMT2-207ENST00000553837 DUS2Q9NX74 493 aaKnown RBP12.25□□□□□ -0.45
SHMT2-207ENST00000553837 TMEM9Q9P0T7 183 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 VTI1BQ9UEU0 232 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 DSEQ9UL01 958 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 RAP2CQ9Y3L5 183 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 MYO16Q9Y6X6 1858 aa12.25□□□□□ -0.45
SHMT2-207ENST00000553837 TARM1B6A8C7 271 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms