RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 BECN1Q14457 450 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 HNF4GQ14541 408 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 CRYMQ14894 314 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 HSPB2Q16082 182 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 ZSCAN26Q16670 478 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 SLC9B1Q4ZJI4 515 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 ESCO2Q56NI9 601 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 TDRD12Q587J7 1177 aaKnown RBP3.32□□□□□ -1.88
USP28-210ENST00000542033 LCE1AQ5T7P2 110 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 ARMC3Q5W041 872 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 TYW3Q6IPR3 259 aaKnown RBP3.32□□□□□ -1.88
USP28-210ENST00000542033 NCEH1Q6PIU2 408 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 TRILQ7L0X0 811 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 SZRD1Q7Z422 152 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 SFTPA2Q8IWL1 248 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 TAGAPQ8N103 731 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 PDCL2Q8N4E4 241 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 SRBD1Q8N5C6 995 aaKnown RBP3.32□□□□□ -1.88
USP28-210ENST00000542033 IQCF1Q8N6M8 205 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 FAM184AQ8NB25 1140 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 CCDC191Q8NCU4 936 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 SCFD2Q8WU76 684 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 MIB2Q96AX9 1013 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 TXNDC15Q96J42 360 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 RMDN2Q96LZ7 410 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 KLHL15Q96M94 604 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 CAMK1GQ96NX5 476 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 ZPBPQ9BS86 351 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 HEMGNQ9BXL5 484 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 SEZ6LQ9BYH1 1024 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 HIPK2Q9H2X6 1198 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 CYSLTR2Q9NS75 346 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 EHD2Q9NZN4 543 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 WNT16Q9UBV4 365 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 HSPB7Q9UBY9 170 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 RPS6KA6Q9UK32 745 aa3.32□□□□□ -1.88
USP28-210ENST00000542033 DDX49Q9Y6V7 483 aaKnown RBP3.32□□□□□ -1.88
USP28-210ENST00000542033 DHX29Q7Z478 1369 aaKnown RBP3.31□□□□□ -1.88
USP28-210ENST00000542033 IGHV4-28A0A0C4DH34 117 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 A0A1B0GVM2 712 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 A0A1W2PQM1 296 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 KRTAP29-1A8MX34 341 aaPredicted RBP3.31□□□□□ -1.88
USP28-210ENST00000542033 MYO1GB0I1T2 1018 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 BCAT2O15382 392 aaPredicted RBP3.31□□□□□ -1.88
USP28-210ENST00000542033 SMAD6O43541 496 aaKnown RBP3.31□□□□□ -1.88
USP28-210ENST00000542033 HTATSF1O43719 755 aaKnown RBP3.31□□□□□ -1.88
USP28-210ENST00000542033 SERPINI2O75830 405 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 SOX30O94993 753 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 GLUD1P00367 558 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 HEXAP06865 529 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 IL11P20809 199 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 C21orf33P30042 268 aaPredicted RBP3.31□□□□□ -1.88
USP28-210ENST00000542033 PPARGP37231 505 aaPredicted RBP3.31□□□□□ -1.88
USP28-210ENST00000542033 RPL3P39023 403 aaKnown RBP3.31□□□□□ -1.88
USP28-210ENST00000542033 NNMTP40261 264 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 HADHAP40939 763 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 AMTP48728 403 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 GLUD2P49448 558 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 IFI35P80217 286 aaPredicted RBP3.31□□□□□ -1.88
USP28-210ENST00000542033 ADORA2A-AS1P86434 159 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 EGR4Q05215 589 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 GOLGA8DPQ0D2H9 430 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 Q0VFX4 171 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 STK4Q13043 487 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 IFT88Q13099 833 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 CTTNQ14247 550 aaKnown RBP3.31□□□□□ -1.88
USP28-210ENST00000542033 HLFQ16534 295 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 SOWAHAQ2M3V2 549 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 PLEKHS1Q5SXH7 462 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 GPR139Q6DWJ6 353 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.31□□□□□ -1.88
USP28-210ENST00000542033 KIAA1161Q6NSJ0 714 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 LRRC8EQ6NSJ5 796 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 CDC73Q6P1J9 531 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 TMEM154Q6P9G4 183 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 ZNF771Q7L3S4 317 aaPredicted RBP3.31□□□□□ -1.88
USP28-210ENST00000542033 BHLHA9Q7RTU4 235 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 FJX1Q86VR8 437 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 ZSCAN30Q86W11 494 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 CNTROBQ8N137 903 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 ZCCHC9Q8N567 271 aaKnown RBP3.31□□□□□ -1.88
USP28-210ENST00000542033 PARP16Q8N5Y8 322 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 B4GALNT2Q8NHY0 566 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 NEK9Q8TD19 979 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 ADAMTS14Q8WXS8 1223 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 POMGNT1Q8WZA1 660 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 TRIB2Q92519 343 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 SMARCE1Q969G3 411 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 JAKMIP2Q96AA8 810 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 FAM149B1Q96BN6 582 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 ZMAT2Q96NC0 199 aaKnown RBP3.31□□□□□ -1.88
USP28-210ENST00000542033 ZNF570Q96NI8 536 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 PIP5K1AQ99755 562 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 LBHD1Q9BQE6 289 aaPredicted RBP3.31□□□□□ -1.88
USP28-210ENST00000542033 MXRA8Q9BRK3 442 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 LZTS2Q9BRK4 669 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 H2AFJQ9BTM1 129 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 MMTAG2Q9BU76 263 aaKnown RBP3.31□□□□□ -1.88
USP28-210ENST00000542033 MXD3Q9BW11 206 aa3.31□□□□□ -1.88
USP28-210ENST00000542033 IQCGQ9H095 443 aaKnown RBP3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms