RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 CLIC4Q9Y696 253 aa9.14□□□□□ -0.95
USP28-205ENST00000537706 SPG11Q96JI7 2443 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 DRGXA6NNA5 263 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 IGHEP01854 428 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 GLI1P08151 1106 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 FOSL1P15407 271 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 ITIH2P19823 946 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 TRIM23P36406 574 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 VAV2P52735 878 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 RPS18P62269 152 aaKnown RBP9.13□□□□□ -0.95
USP28-205ENST00000537706 CTBSQ01459 385 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 EIF4EBP2Q13542 120 aaPredicted RBP9.13□□□□□ -0.95
USP28-205ENST00000537706 CRB2Q5IJ48 1285 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 BRMS1LQ5PSV4 323 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 TMEM270Q6UE05 265 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 SLC9B2Q86UD5 537 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 CEP97Q8IW35 865 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 PAF1Q8N7H5 531 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 DHX58Q96C10 678 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 RNF31Q96EP0 1072 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 EXOC1Q9NV70 894 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 KCTD5Q9NXV2 234 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 CRYBG3Q68DQ2 2970 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 DNHD1Q96M86 4753 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 SPENQ96T58 3664 aaKnown RBP9.13□□□□□ -0.95
USP28-205ENST00000537706 RECQL5O94762 991 aaPredicted RBP9.13□□□□□ -0.95
USP28-205ENST00000537706 KRTAP10-9P60411 292 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 LTBQ06643 244 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 NFATC2Q13469 925 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 IL10RAQ13651 578 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 RAPSNQ13702 412 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 IGFL3Q6UXB1 125 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 BPHLQ86WA6 291 aaPredicted RBP9.13□□□□□ -0.95
USP28-205ENST00000537706 RAB43Q86YS6 212 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 STK32AQ8WU08 396 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 TFAP2BQ92481 460 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 WDCPQ9H6R7 721 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 SARS2Q9NP81 518 aaKnown RBP9.13□□□□□ -0.95
USP28-205ENST00000537706 PCDH12Q9NPG4 1184 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 RARRES3Q9UL19 164 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 SUFUQ9UMX1 484 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 NEU2Q9Y3R4 380 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 PCDHGB6Q9Y5F9 930 aa9.13□□□□□ -0.95
USP28-205ENST00000537706 TRBV23OR9-2A0A075B6M9 112 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 RASSF9O75901 435 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 ELFN1P0C7U0 828 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 KLK2P20151 261 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 NR2F2P24468 414 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 APCP25054 2843 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 BRD2P25440 801 aaKnown RBP9.12□□□□□ -0.95
USP28-205ENST00000537706 HNRNPH3P31942 346 aaKnown RBP9.12□□□□□ -0.95
USP28-205ENST00000537706 ADCY8P40145 1251 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 MTORP42345 2549 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 SMSP52788 366 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 PITX1P78337 314 aaPredicted RBP9.12□□□□□ -0.95
USP28-205ENST00000537706 PTK2Q05397 1052 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 UGP2Q16851 508 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 ATXN7L2Q5T6C5 722 aaPredicted RBP9.12□□□□□ -0.95
USP28-205ENST00000537706 PNCKQ6P2M8 343 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 BRAT1Q6PJG6 821 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 FAM180AQ6UWF9 173 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 ZNF517Q6ZMY9 492 aaPredicted RBP9.12□□□□□ -0.95
USP28-205ENST00000537706 Q6ZS92 163 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 CXXC5Q7LFL8 322 aaKnown RBP9.12□□□□□ -0.95
USP28-205ENST00000537706 DEFB106AQ8N104 65 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 LRRN4CLQ8ND94 238 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 SLC37A2Q8TED4 501 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 FAR1Q8WVX9 515 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 CASKIN2Q8WXE0 1202 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 MR1Q95460 341 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 C9orf72Q96LT7 481 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 TRAPPC9Q96Q05 1148 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 OR2M4Q96R27 311 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 TTYH3Q9C0H2 523 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 LMBRD1Q9NUN5 540 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 ASNSD1Q9NWL6 643 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 MPP6Q9NZW5 540 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 CNOT8Q9UFF9 292 aaKnown RBP9.12□□□□□ -0.95
USP28-205ENST00000537706 SMC3Q9UQE7 1217 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 NTNG1Q9Y2I2 539 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 ATP8A1Q9Y2Q0 1164 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 ADGRG4Q8IZF6 3080 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 PDZD2O15018 2839 aa9.12□□□□□ -0.95
USP28-205ENST00000537706 E2F3O00716 465 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 HSF2BPO75031 334 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 IVLP07476 585 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 RPL34P49207 117 aaKnown RBP9.11□□□□□ -0.95
USP28-205ENST00000537706 SEPHS1P49903 392 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 CASP6P55212 293 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 RHOAP61586 193 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.11□□□□□ -0.95
USP28-205ENST00000537706 ZNF765Q7L2R6 523 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 ZNF354CQ86Y25 554 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 SFRP1Q8N474 314 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 CLEC1AQ8NC01 280 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 GRHL3Q8TE85 626 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 FER1L6-AS2Q96M78 137 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 IP6K3Q96PC2 410 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 WDR77Q9BQA1 342 aaPredicted RBP9.11□□□□□ -0.95
USP28-205ENST00000537706 LGR4Q9BXB1 951 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms