RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 CSGALNACT1Q8TDX6 532 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 AFG1LQ8WV93 481 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 TEKT1Q969V4 418 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 MIB2Q96AX9 1013 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 SDCCAG3Q96C92 435 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 FAM84BQ96KN1 310 aaPredicted RBP4.13□□□□□ -1.75
CD44-235ENST00000532339 RAD9AQ99638 391 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 SFXN1Q9H9B4 322 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 WASH6PQ9NQA3 447 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 G6PC2Q9NQR9 355 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 IFT80Q9P2H3 777 aaPredicted RBP4.13□□□□□ -1.75
CD44-235ENST00000532339 CNTN6Q9UQ52 1028 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 FREM2Q5SZK8 3169 aa4.13□□□□□ -1.75
CD44-235ENST00000532339 LOC285556D6RIA3 1793 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 CREBBPQ92793 2442 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 GAGE12JA6NER3 117 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 FOXO6A8MYZ6 492 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 HMGB1P1B2RPK0 211 aaPredicted RBP4.12□□□□□ -1.75
CD44-235ENST00000532339 NKX2-8O15522 239 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 HOXC11O43248 304 aaPredicted RBP4.12□□□□□ -1.75
CD44-235ENST00000532339 KAT7O95251 611 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 GJB5O95377 273 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 RFC2P35250 354 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 MLH1P40692 756 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 CCR5P51681 352 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 RRP1P56182 461 aaKnown RBP4.12□□□□□ -1.75
CD44-235ENST00000532339 ACTR2P61160 394 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 MPP1Q00013 466 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 HYAL1Q12794 435 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 DDX10Q13206 875 aaKnown RBP4.12□□□□□ -1.75
CD44-235ENST00000532339 TAF7Q15545 349 aaPredicted RBP4.12□□□□□ -1.75
CD44-235ENST00000532339 ASIC2Q16515 512 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 COL28A1Q2UY09 1125 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 KRTAP21-3Q3LHN1 58 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 ANKRD45Q5TZF3 282 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 ASPHD1Q5U4P2 390 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 APOBEC3HQ6NTF7 200 aaKnown RBP4.12□□□□□ -1.75
CD44-235ENST00000532339 RETSATQ6NUM9 610 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 C19orf48Q6RUI8 117 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 RRAGAQ7L523 313 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.12□□□□□ -1.75
CD44-235ENST00000532339 DEFB128Q7Z7B8 93 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 PCGF5Q86SE9 256 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 RBMXL3Q8N7X1 1067 aaKnown RBP4.12□□□□□ -1.75
CD44-235ENST00000532339 OR6Y1Q8NGX8 325 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 OIT3Q8WWZ8 545 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 ATP2A3Q93084 1043 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 SKA1Q96BD8 255 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 TRAPPC9Q96Q05 1148 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 SEZ6LQ9BYH1 1024 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 ELAC1Q9H777 363 aaKnown RBP4.12□□□□□ -1.75
CD44-235ENST00000532339 SEPSECSQ9HD40 501 aaKnown RBP4.12□□□□□ -1.75
CD44-235ENST00000532339 SPAG4Q9NPE6 437 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 UBN1Q9NPG3 1134 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 RASSF1Q9NS23 344 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 HIF1ANQ9NWT6 349 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 MAP3K20Q9NYL2 800 aaKnown RBP4.12□□□□□ -1.75
CD44-235ENST00000532339 C19orf53Q9UNZ5 99 aaPredicted RBP4.12□□□□□ -1.75
CD44-235ENST00000532339 RABGAP1Q9Y3P9 1069 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 KIF16BQ96L93 1317 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 SYNRGQ9UMZ2 1314 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 A0A1B0GUL6 1792 aa4.12□□□□□ -1.75
CD44-235ENST00000532339 C3orf70A6NLC5 250 aaPredicted RBP4.11□□□□□ -1.75
CD44-235ENST00000532339 STRNO43815 780 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 CER1O95813 267 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 KLKB1P03952 638 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 ALDOAP04075 364 aaKnown RBP4.11□□□□□ -1.75
CD44-235ENST00000532339 ASGR1P07306 291 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 CYP21A2P08686 494 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 LIFRP42702 1097 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 RFX2P48378 723 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 KRTAP10-6P60371 365 aaPredicted RBP4.11□□□□□ -1.75
CD44-235ENST00000532339 TLE3Q04726 772 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 AIMP1Q12904 312 aaKnown RBP4.11□□□□□ -1.75
CD44-235ENST00000532339 GPM6BQ13491 265 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 SMAD1Q15797 465 aaKnown RBP4.11□□□□□ -1.75
CD44-235ENST00000532339 GALNTL6Q49A17 601 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 HMBOX1Q6NT76 420 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 TMEM88Q6PEY1 159 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 PARM1Q6UWI2 310 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 MCM10Q7L590 875 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 MAATS1Q7Z4T9 603 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 ANKS1BQ7Z6G8 1248 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 HEATR4Q86WZ0 1026 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 ADGRF3Q8IZF5 1079 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 WDR60Q8WVS4 1066 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 INPP5DQ92835 1189 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 C3orf49Q96BT1 292 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 MCRS1Q96EZ8 462 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 TWNKQ96RR1 684 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 SEC62Q99442 399 aaKnown RBP4.11□□□□□ -1.75
CD44-235ENST00000532339 SIRT3Q9NTG7 399 aaPredicted RBP4.11□□□□□ -1.75
CD44-235ENST00000532339 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.11□□□□□ -1.75
CD44-235ENST00000532339 TMEM160Q9NX00 188 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 PLK2Q9NYY3 685 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 WNT16Q9UBV4 365 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 GMEB2Q9UKD1 530 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 TNFSF13BQ9Y275 285 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 TMEM98Q9Y2Y6 226 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 SIP14410 1827 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms