RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 ELMO1Q92556 727 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 TFAP2CQ92754 450 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 LRCH3Q96II8 777 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 SENP8Q96LD8 212 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 NEURL2Q9BR09 285 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 FTHL17Q9BXU8 183 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 SIK2Q9H0K1 926 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 HMG20AQ9NP66 347 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 GNPTGQ9UJJ9 305 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 PNMA8BQ9ULN7 279 aaPredicted RBP9.65□□□□□ -0.86
VCAN-210ENST00000513960 A0A0J9YYE9 177 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 SYNCRIPO60506 623 aaKnown RBP9.65□□□□□ -0.86
VCAN-210ENST00000513960 MATN1P21941 496 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 OPRL1P41146 370 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 KPNA2P52292 529 aaKnown RBP9.65□□□□□ -0.86
VCAN-210ENST00000513960 FOXD4Q12950 439 aaPredicted RBP9.65□□□□□ -0.86
VCAN-210ENST00000513960 BROXQ5VW32 411 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 HFE2Q6ZVN8 426 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 SFRP1Q8N474 314 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 TERB1Q8NA31 727 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 ARRDC4Q8NCT1 418 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 KCTD14Q9BQ13 255 aaPredicted RBP9.65□□□□□ -0.86
VCAN-210ENST00000513960 KATNAL1Q9BW62 490 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 FNDC3AQ9Y2H6 1198 aaKnown RBP9.65□□□□□ -0.86
VCAN-210ENST00000513960 TIMM13Q9Y5L4 95 aaPredicted RBP9.65□□□□□ -0.86
VCAN-210ENST00000513960 SBF1O95248 1867 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 UNCXA6NJT0 531 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 NCAM2O15394 837 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 ZBTB24O43167 697 aaPredicted RBP9.65□□□□□ -0.86
VCAN-210ENST00000513960 TCEA1P23193 301 aaKnown RBP9.65□□□□□ -0.86
VCAN-210ENST00000513960 LHX1P48742 406 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 GJA9P57773 515 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 BEX3Q00994 111 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 PFKPQ01813 784 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 XKR4Q5GH76 650 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 SMG8Q8ND04 991 aaKnown RBP9.65□□□□□ -0.86
VCAN-210ENST00000513960 SLC9A7Q96T83 725 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 MUC3BQ9H195 1237 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 MIR1-1HGQ9H1L0 117 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 CPA4Q9UI42 421 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 BAG5Q9UL15 447 aa9.65□□□□□ -0.86
VCAN-210ENST00000513960 FAM32AQ9Y421 112 aaKnown RBP9.65□□□□□ -0.86
VCAN-210ENST00000513960 PLXNB2O15031 1838 aa9.65□□□□□ -0.87
VCAN-210ENST00000513960 CLDN25C9JDP6 229 aa9.65□□□□□ -0.87
VCAN-210ENST00000513960 MTSS1O43312 755 aa9.65□□□□□ -0.87
VCAN-210ENST00000513960 NADKO95544 446 aaPredicted RBP9.65□□□□□ -0.87
VCAN-210ENST00000513960 OXTRP30559 389 aa9.65□□□□□ -0.87
VCAN-210ENST00000513960 PRKAA2P54646 552 aa9.65□□□□□ -0.87
VCAN-210ENST00000513960 AIF1P55008 147 aa9.65□□□□□ -0.87
VCAN-210ENST00000513960 PPP4R4Q6NUP7 873 aa9.65□□□□□ -0.87
VCAN-210ENST00000513960 SLCO4A1Q96BD0 722 aa9.65□□□□□ -0.87
VCAN-210ENST00000513960 FSD1LQ9BXM9 530 aa9.65□□□□□ -0.87
VCAN-210ENST00000513960 DUS2Q9NX74 493 aaKnown RBP9.65□□□□□ -0.87
VCAN-210ENST00000513960 NDUFAF1Q9Y375 327 aa9.65□□□□□ -0.87
VCAN-210ENST00000513960 MTF2Q9Y483 593 aaPredicted RBP9.65□□□□□ -0.87
VCAN-210ENST00000513960 PTGDR2Q9Y5Y4 395 aa9.65□□□□□ -0.87
VCAN-210ENST00000513960 YJEFN3A6XGL0 299 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 CLPXO76031 633 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 USP17L7P0C7H9 530 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 CAPGP40121 348 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 ACADVLP49748 655 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 RABGGTBP53611 331 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 MRPS15P82914 257 aaKnown RBP9.64□□□□□ -0.87
VCAN-210ENST00000513960 NHSL2Q5HYW2 709 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 BTLAQ7Z6A9 289 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 SLC35B4Q969S0 331 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 NT5C3BQ969T7 300 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 SLC2A13Q96QE2 648 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 EHD1Q9H4M9 534 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 WDCPQ9H6R7 721 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 ALG9Q9H6U8 611 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 RAD54BQ9Y620 910 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 GSTA4O15217 222 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 CLASP2O75122 1294 aaKnown RBP9.64□□□□□ -0.87
VCAN-210ENST00000513960 F9P00740 461 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 PAX3P23760 479 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 PTPN3P26045 913 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 PSMB9P28065 219 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 DAOAP59103 153 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 MAP2K5Q13163 448 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 FRG1Q14331 258 aaKnown RBP9.64□□□□□ -0.87
VCAN-210ENST00000513960 HERC3Q15034 1050 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 OTUD1Q5VV17 481 aaPredicted RBP9.64□□□□□ -0.87
VCAN-210ENST00000513960 TMC5Q6UXY8 1006 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 PAQR9Q6ZVX9 377 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 CCDC103Q8IW40 242 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 CMTR2Q8IYT2 770 aaKnown RBP9.64□□□□□ -0.87
VCAN-210ENST00000513960 TXNDC5Q8NBS9 432 aaKnown RBP9.64□□□□□ -0.87
VCAN-210ENST00000513960 HEXDCQ8WVB3 486 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 ACDQ96AP0 544 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 CENPNQ96H22 339 aaPredicted RBP9.64□□□□□ -0.87
VCAN-210ENST00000513960 MUS81Q96NY9 551 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 SIAEQ9HAT2 523 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 CNGB3Q9NQW8 809 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 ZNHIT2Q9UHR6 403 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 ANAPC2Q9UJX6 822 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 POU2F3Q9UKI9 436 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 ERGIC3Q9Y282 383 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 LINC00854A0A1B0GVQ3 168 aa9.64□□□□□ -0.87
VCAN-210ENST00000513960 DYTNA2CJ06 578 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms