RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 HES2Q9Y543 173 aa11.26□□□□□ -0.61
TCOF1-211ENST00000513346 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.25□□□□□ -0.61
TCOF1-211ENST00000513346 IGLV3-22A0A075B6J6 115 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 TCRBV7S3A2A0A539 114 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 SYNDIG1LA6NDD5 238 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 BTBD19C9JJ37 291 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 EI24O14681 340 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 TBX1O43435 398 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 RGS10O43665 173 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 GJB1P08034 283 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 CD48P09326 243 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 SMIM10L2AP0DMW4 78 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 SMIM10L2BP0DMW5 78 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 PRKAR2AP13861 404 aaKnown RBP11.25□□□□□ -0.61
TCOF1-211ENST00000513346 SCNN1GP51170 649 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 RHOAP61586 193 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 MSS51Q4VC12 460 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 STXBP5Q5T5C0 1151 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 ARMC8Q8IUR7 673 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 CENPIQ92674 756 aaPredicted RBP11.25□□□□□ -0.61
TCOF1-211ENST00000513346 HGH1Q9BTY7 390 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 CIPCQ9C0C6 399 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 SEMA4BQ9NPR2 832 aaPredicted RBP11.25□□□□□ -0.61
TCOF1-211ENST00000513346 MSRAQ9UJ68 235 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 COL1A1P02452 1464 aaPredicted RBP11.25□□□□□ -0.61
TCOF1-211ENST00000513346 SLC22A1O15245 554 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 ANGPTL1O95841 491 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 CNPP09543 421 aaKnown RBP11.25□□□□□ -0.61
TCOF1-211ENST00000513346 PAX3P23760 479 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 YWHAQP27348 245 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 RXRGP48443 463 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 IDH2P48735 452 aaKnown RBP11.25□□□□□ -0.61
TCOF1-211ENST00000513346 CLCN5P51795 746 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 TBX4P57082 545 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 MTA1Q13330 715 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 TGFBIQ15582 683 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 DGKKQ5KSL6 1271 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 TMEM132CQ8N3T6 1108 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 CANT1Q8WVQ1 401 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 NSMCE3Q96MG7 304 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 RBM4BQ9BQ04 359 aaKnown RBP11.25□□□□□ -0.61
TCOF1-211ENST00000513346 RBM4Q9BWF3 364 aaKnown RBP11.25□□□□□ -0.61
TCOF1-211ENST00000513346 ST6GALNAC4Q9H4F1 302 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 EHD1Q9H4M9 534 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 NT5MQ9NPB1 228 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 SMPD4Q9NXE4 827 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 ZDHHC7Q9NXF8 308 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 SUCOQ9UBS9 1254 aaKnown RBP11.25□□□□□ -0.61
TCOF1-211ENST00000513346 CCDC162PA2VCL2 907 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 FUOMA2VDF0 154 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 KRT87PA6NCN2 255 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 FADS2O95864 444 aaKnown RBP11.25□□□□□ -0.61
TCOF1-211ENST00000513346 ZNF467Q7Z7K2 595 aaPredicted RBP11.25□□□□□ -0.61
TCOF1-211ENST00000513346 OR52B2Q96RD2 323 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 HAPLN3Q96S86 360 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 ING4Q9UNL4 249 aa11.25□□□□□ -0.61
TCOF1-211ENST00000513346 ZNF99A8MXY4 864 aaPredicted RBP11.24□□□□□ -0.61
TCOF1-211ENST00000513346 CXorf49A8MYA2 514 aaPredicted RBP11.24□□□□□ -0.61
TCOF1-211ENST00000513346 STX16-NPEPL1H3BU86 382 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 UGT2B11O75310 529 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 LTFP02788 710 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 ITIH1P19827 911 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 MTHFRP42898 656 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 RAB25P57735 213 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 UBAP2Q5T6F2 1119 aaKnown RBP11.24□□□□□ -0.61
TCOF1-211ENST00000513346 TYW3Q6IPR3 259 aaKnown RBP11.24□□□□□ -0.61
TCOF1-211ENST00000513346 HDAC10Q969S8 669 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 CDK5RAP1Q96SZ6 601 aaKnown RBP11.24□□□□□ -0.61
TCOF1-211ENST00000513346 CDT1Q9H211 546 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 TAS2R13Q9NYV9 303 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 CCDC59Q9P031 241 aaKnown RBP11.24□□□□□ -0.61
TCOF1-211ENST00000513346 RWDD3Q9Y3V2 267 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 PMF1-BGLAPU3KQ54 211 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 KLRG2A4D1S0 409 aaPredicted RBP11.24□□□□□ -0.61
TCOF1-211ENST00000513346 SEMA3DO95025 777 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 BMP10O95393 424 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 CPSF4O95639 269 aaKnown RBP11.24□□□□□ -0.61
TCOF1-211ENST00000513346 MT-ND1P03886 318 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 BDNFP23560 247 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 WEE1P30291 646 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 MARC1Q5VT66 337 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 EEF1DP3Q658K8 133 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 TMEM86AQ8N2M4 240 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 RNF38Q9H0F5 515 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 SP140LQ9H930 580 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 MTRRQ9UBK8 725 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 FBXO5Q9UKT4 447 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 RGPD2P0DJD1 1756 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 H3BNH8 94 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 HTRA2O43464 458 aaPredicted RBP11.24□□□□□ -0.61
TCOF1-211ENST00000513346 USP2O75604 605 aaPredicted RBP11.24□□□□□ -0.61
TCOF1-211ENST00000513346 FARP2O94887 1054 aaPredicted RBP11.24□□□□□ -0.61
TCOF1-211ENST00000513346 NFICP08651 508 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 ZNF182P17025 639 aaPredicted RBP11.24□□□□□ -0.61
TCOF1-211ENST00000513346 GRK3P35626 688 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 LIPEQ05469 1076 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 COX10Q12887 443 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 CTBP1Q13363 440 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 VPS26BQ4G0F5 336 aa11.24□□□□□ -0.61
TCOF1-211ENST00000513346 AARS2Q5JTZ9 985 aaKnown RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms