RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 CNGA3Q16281 694 aa13.94□□□□□ -0.18
VARS-227ENST00000489979 DEFB109BQ30KR1 87 aa13.94□□□□□ -0.18
VARS-227ENST00000489979 DENND2CQ68D51 928 aa13.94□□□□□ -0.18
VARS-227ENST00000489979 TMEM71Q6P5X7 295 aa13.94□□□□□ -0.18
VARS-227ENST00000489979 UNC5BQ8IZJ1 945 aa13.94□□□□□ -0.18
VARS-227ENST00000489979 NLGN4XQ8N0W4 816 aa13.94□□□□□ -0.18
VARS-227ENST00000489979 BMPERQ8N8U9 685 aa13.94□□□□□ -0.18
VARS-227ENST00000489979 C3orf20Q8ND61 904 aa13.94□□□□□ -0.18
VARS-227ENST00000489979 NLGN4YQ8NFZ3 816 aaPredicted RBP13.94□□□□□ -0.18
VARS-227ENST00000489979 KIAA1143Q96AT1 154 aaPredicted RBP13.94□□□□□ -0.18
VARS-227ENST00000489979 RTP4Q96DX8 246 aa13.94□□□□□ -0.18
VARS-227ENST00000489979 CTRCQ99895 268 aa13.94□□□□□ -0.18
VARS-227ENST00000489979 DPYSL5Q9BPU6 564 aa13.94□□□□□ -0.18
VARS-227ENST00000489979 SPRY4Q9C004 299 aa13.94□□□□□ -0.18
VARS-227ENST00000489979 GANQ9H2C0 597 aa13.94□□□□□ -0.18
VARS-227ENST00000489979 DONSONQ9NYP3 566 aa13.94□□□□□ -0.18
VARS-227ENST00000489979 PLEKHM1Q9Y4G2 1056 aa13.94□□□□□ -0.18
VARS-227ENST00000489979 GOLGA6CA6NDK9 693 aa13.93□□□□□ -0.18
VARS-227ENST00000489979 GOLGA6BA6NDN3 693 aa13.93□□□□□ -0.18
VARS-227ENST00000489979 GOLGA6DP0CG33 693 aa13.93□□□□□ -0.18
VARS-227ENST00000489979 MAP4P27816 1152 aaKnown RBP13.93□□□□□ -0.18
VARS-227ENST00000489979 SOX5P35711 763 aa13.93□□□□□ -0.18
VARS-227ENST00000489979 ETV3P41162 512 aa13.93□□□□□ -0.18
VARS-227ENST00000489979 ACTR1BP42025 376 aa13.93□□□□□ -0.18
VARS-227ENST00000489979 PPM1FP49593 454 aaPredicted RBP13.93□□□□□ -0.18
VARS-227ENST00000489979 ZNF143P52747 638 aaPredicted RBP13.93□□□□□ -0.18
VARS-227ENST00000489979 AIF1P55008 147 aa13.93□□□□□ -0.18
VARS-227ENST00000489979 ACTR1AP61163 376 aa13.93□□□□□ -0.18
VARS-227ENST00000489979 GPLD1P80108 840 aa13.93□□□□□ -0.18
VARS-227ENST00000489979 NSUN2Q08J23 767 aaKnown RBP eCLIP13.93□□□□□ -0.18
VARS-227ENST00000489979 PEX6Q13608 980 aa13.93□□□□□ -0.18
VARS-227ENST00000489979 LACTB2Q53H82 288 aaPredicted RBP13.93□□□□□ -0.18
VARS-227ENST00000489979 SNAP47Q5SQN1 464 aa13.93□□□□□ -0.18
VARS-227ENST00000489979 ARHGAP36Q6ZRI8 547 aa13.93□□□□□ -0.18
VARS-227ENST00000489979 TIPARPQ7Z3E1 657 aaKnown RBP13.93□□□□□ -0.18
VARS-227ENST00000489979 ZNF761Q86XN6 746 aaPredicted RBP13.93□□□□□ -0.18
VARS-227ENST00000489979 PHF13Q86YI8 300 aaPredicted RBP13.93□□□□□ -0.18
VARS-227ENST00000489979 APOBEC4Q8WW27 367 aaKnown RBP13.93□□□□□ -0.18
VARS-227ENST00000489979 MIB2Q96AX9 1013 aa13.93□□□□□ -0.18
VARS-227ENST00000489979 TEFMQ96QE5 360 aaKnown RBP13.93□□□□□ -0.18
VARS-227ENST00000489979 EFHD1Q9BUP0 239 aa13.93□□□□□ -0.18
VARS-227ENST00000489979 SP110Q9HB58 689 aa13.93□□□□□ -0.18
VARS-227ENST00000489979 GPATCH2LQ9NWQ4 482 aa13.93□□□□□ -0.18
VARS-227ENST00000489979 GOLGA6AQ9NYA3 693 aa13.93□□□□□ -0.18
VARS-227ENST00000489979 PDP2Q9P2J9 529 aa13.93□□□□□ -0.18
VARS-227ENST00000489979 SLC17A4Q9Y2C5 497 aa13.93□□□□□ -0.18
VARS-227ENST00000489979 TCRBV5S1A1TA0A578 114 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 TTC24A2A3L6 582 aaPredicted RBP13.92□□□□□ -0.18
VARS-227ENST00000489979 PRR19A6NJB7 356 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 A8MU76 341 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 DFFAO00273 331 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 HEXIM1O94992 359 aaKnown RBP13.92□□□□□ -0.18
VARS-227ENST00000489979 CALB1P05937 261 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 IVLP07476 585 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 ERCC5P28715 1186 aaPredicted RBP13.92□□□□□ -0.18
VARS-227ENST00000489979 VIPR1P32241 457 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 HTR7P34969 479 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 KLK7P49862 253 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 POLR2FP61218 127 aaKnown RBP13.92□□□□□ -0.18
VARS-227ENST00000489979 AP1S1P61966 158 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 RPL7AP62424 266 aaKnown RBP13.92□□□□□ -0.18
VARS-227ENST00000489979 CLEC16AQ2KHT3 1053 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 ATP1A1-AS1Q5TC04 95 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 RAET1GQ6H3X3 334 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 C16orf46Q6P387 395 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 DNAJC24Q6P3W2 148 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 DOK6Q6PKX4 331 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 HSD11B1LQ7Z5J1 315 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 ARHGAP12Q8IWW6 846 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 STARD8Q92502 1023 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 DTD2Q96FN9 168 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 AHCYL2Q96HN2 611 aaKnown RBP13.92□□□□□ -0.18
VARS-227ENST00000489979 MCEEQ96PE7 176 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 SLC38A3Q99624 504 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 VPS16Q9H269 839 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 NLRC4Q9NPP4 1024 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 KCTD5Q9NXV2 234 aa13.92□□□□□ -0.18
VARS-227ENST00000489979 TRBV23OR9-2A0A075B6M9 112 aa13.91□□□□□ -0.18
VARS-227ENST00000489979 ANKRD62A6NC57 917 aa13.91□□□□□ -0.18
VARS-227ENST00000489979 EEF2KO00418 725 aaKnown RBP13.91□□□□□ -0.18
VARS-227ENST00000489979 MTSS1O43312 755 aa13.91□□□□□ -0.18
VARS-227ENST00000489979 CD97P48960 835 aa13.91□□□□□ -0.18
VARS-227ENST00000489979 JAM2P57087 298 aa13.91□□□□□ -0.18
VARS-227ENST00000489979 MC2RQ01718 297 aa13.91□□□□□ -0.18
VARS-227ENST00000489979 ABHD18Q0P651 414 aa13.91□□□□□ -0.18
VARS-227ENST00000489979 KLRB1Q12918 225 aa13.91□□□□□ -0.18
VARS-227ENST00000489979 SEPT6Q14141 434 aa13.91□□□□□ -0.18
VARS-227ENST00000489979 RFTN1Q14699 578 aaPredicted RBP13.91□□□□□ -0.18
VARS-227ENST00000489979 HIST2H2BCQ6DN03 193 aa13.91□□□□□ -0.18
VARS-227ENST00000489979 CEACAM20Q6UY09 585 aa13.91□□□□□ -0.18
VARS-227ENST00000489979 MON1BQ7L1V2 547 aa13.91□□□□□ -0.18
VARS-227ENST00000489979 KDELC2Q7Z4H8 507 aa13.91□□□□□ -0.18
VARS-227ENST00000489979 PDCD6IPQ8WUM4 868 aaKnown RBP13.91□□□□□ -0.18
VARS-227ENST00000489979 CNPY3Q9BT09 278 aa13.91□□□□□ -0.18
VARS-227ENST00000489979 LRRC4CQ9HCJ2 640 aa13.91□□□□□ -0.18
VARS-227ENST00000489979 APMAPQ9HDC9 416 aa13.91□□□□□ -0.18
VARS-227ENST00000489979 SAMSN1Q9NSI8 373 aaKnown RBP13.91□□□□□ -0.18
VARS-227ENST00000489979 TAB2Q9NYJ8 693 aa13.91□□□□□ -0.18
VARS-227ENST00000489979 AP4E1Q9UPM8 1137 aa13.91□□□□□ -0.18
VARS-227ENST00000489979 TP53TG5Q9Y2B4 290 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms