RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 MAFKO60675 156 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 ECEL1O95672 775 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 CPNE6O95741 557 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 ITGB2P05107 769 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 GZMAP12544 262 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 CCL4P13236 92 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 TCF4P15884 667 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 AMPD1P23109 780 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 ALDH4A1P30038 563 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 PCK1P35558 622 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 HSPA9P38646 679 aaKnown RBP12.38□□□□□ -0.43
CPSF3-204ENST00000489403 GNPDA1P46926 289 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 MAXP61244 160 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 AMZ1Q400G9 498 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 RAET1GQ6H3X3 334 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 TMCO3Q6UWJ1 677 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 ZNF574Q6ZN55 896 aaPredicted RBP12.38□□□□□ -0.43
CPSF3-204ENST00000489403 PRICKLE2Q7Z3G6 844 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 POLNQ7Z5Q5 900 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 TSPAN33Q86UF1 283 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 NAGSQ8N159 534 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 RCBTB1Q8NDN9 531 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 ARHGAP9Q9BRR9 750 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 CLMPQ9H6B4 373 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 RTN4Q9NQC3 1192 aaKnown RBP12.38□□□□□ -0.43
CPSF3-204ENST00000489403 TRNAU1APQ9NX07 287 aaKnown RBP12.38□□□□□ -0.43
CPSF3-204ENST00000489403 KCTD5Q9NXV2 234 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 MYO1AQ9UBC5 1043 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 PHTF1Q9UMS5 762 aa12.38□□□□□ -0.43
CPSF3-204ENST00000489403 AHCTF1Q8WYP5 2266 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 SETXQ7Z333 2677 aaKnown RBP12.37□□□□□ -0.43
CPSF3-204ENST00000489403 BOD1L1Q8NFC6 3051 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 IGHV5-10-1A0A0J9YXX1 117 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 A0A0U1RQS6 177 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 GOLGA6CA6NDK9 693 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 GOLGA6BA6NDN3 693 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.37□□□□□ -0.43
CPSF3-204ENST00000489403 PGLSO95336 258 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 SOD1P00441 154 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 IVLP07476 585 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 GOLGA6DP0CG33 693 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 CYP2A6P11509 494 aaPredicted RBP12.37□□□□□ -0.43
CPSF3-204ENST00000489403 CD82P27701 267 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 TEAD1P28347 426 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 ARL4AP40617 200 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 PRKCIP41743 596 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 POLD2P49005 469 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 ARSDP51689 593 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 CTBSQ01459 385 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 TXNRD3NBQ6F5E7 133 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 SLC30A9Q6PML9 568 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 XKR5Q6UX68 686 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 Q6ZVL8 140 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 BBS5Q8N3I7 341 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 HTR3CQ8WXA8 447 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 HSPH1Q92598 858 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 PMEPA1Q969W9 287 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 SCRN2Q96FV2 425 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 CCDC74BQ96LY2 380 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 CSPG4P5Q96PW8 444 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 MCCC1Q96RQ3 725 aaPredicted RBP12.37□□□□□ -0.43
CPSF3-204ENST00000489403 B3GNT4Q9C0J1 378 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.37□□□□□ -0.43
CPSF3-204ENST00000489403 GOLGA6AQ9NYA3 693 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 AIPL1Q9NZN9 384 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 AKAP7Q9P0M2 348 aaPredicted RBP12.37□□□□□ -0.43
CPSF3-204ENST00000489403 SLC17A4Q9Y2C5 497 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 PPIL1Q9Y3C6 166 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 PCDHB11Q9Y5F2 797 aa12.37□□□□□ -0.43
CPSF3-204ENST00000489403 ZFC3H1O60293 1989 aaKnown RBP12.36□□□□□ -0.43
CPSF3-204ENST00000489403 HGSO14964 777 aaPredicted RBP12.36□□□□□ -0.43
CPSF3-204ENST00000489403 PPM1DO15297 605 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 WISP1O95388 367 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 PDHA1P08559 390 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 FAM87AP0C7U9 286 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 RARAP10276 462 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 CTPS1P17812 591 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 ITGB6P18564 788 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 NFKBIAP25963 317 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 CD1CP29017 333 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 CSF2RBP32927 897 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 ADCY8P40145 1251 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 MMP13P45452 471 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 GPR3P46089 330 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 CYP4F2P78329 520 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 NFKB2Q00653 900 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 KCNC4Q03721 635 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 TYRO3Q06418 890 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 DPTQ07507 201 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 KLHL30Q0D2K2 578 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 CLPPQ16740 277 aaPredicted RBP12.36□□□□□ -0.43
CPSF3-204ENST00000489403 RALGPS1Q5JS13 557 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 ARMC12Q5T9G4 340 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 TMEM164Q5U3C3 297 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 MARC1Q5VT66 337 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 DOK6Q6PKX4 331 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 RFLNAQ6ZTI6 216 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 USP45Q70EL2 814 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 TECPR1Q7Z6L1 1165 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 ATPAF2Q8N5M1 289 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms