RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	CASQ1	P31415	396 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	NR2C2	P49116	596 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	GEMIN4	P57678	1058 aa	Known RBP	8.82	□□□□□ -1
USP4-213	ENST00000488520	RHD	Q02161	417 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	GNA12	Q03113	381 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	SLC20A2	Q08357	652 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	CNTN1	Q12860	1018 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	ZNF211	Q13398	564 aa	Predicted RBP	8.82	□□□□□ -1
USP4-213	ENST00000488520	DPYSL3	Q14195	570 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	NAA30	Q147X3	362 aa	Predicted RBP	8.82	□□□□□ -1
USP4-213	ENST00000488520	PARP15	Q460N3	678 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	SETMAR	Q53H47	684 aa	Predicted RBP	8.82	□□□□□ -1
USP4-213	ENST00000488520	ZNF542P	Q5EBM4	170 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	C3orf38	Q5JPI3	329 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	KIAA1614	Q5VZ46	1190 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	SPOCD1	Q6ZMY3	1216 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	C20orf204	Q6ZNR8	217 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	VSIG1	Q86XK7	387 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	LRRC49	Q8IUZ0	686 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	CACTIN-AS1	Q8N1I8	211 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	BBS5	Q8N3I7	341 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	RTL3	Q8N8U3	475 aa	Known RBP	8.82	□□□□□ -1
USP4-213	ENST00000488520	KDM1B	Q8NB78	822 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	CCNY	Q8ND76	341 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	KCNE4	Q8WWG9	221 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	OR8D1	Q8WZ84	308 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	P3H4	Q92791	437 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	HES6	Q96HZ4	224 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	PBK	Q96KB5	322 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	DEPDC7	Q96QD5	511 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	FEM1A	Q9BSK4	669 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	HEMGN	Q9BXL5	484 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	ATP13A1	Q9HD20	1204 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	PACSIN2	Q9UNF0	486 aa	Predicted RBP	8.82	□□□□□ -1
USP4-213	ENST00000488520	DMTF1	Q9Y222	760 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	ZKSCAN5	Q9Y2L8	839 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	CAPN6	Q9Y6Q1	641 aa		8.82	□□□□□ -1
USP4-213	ENST00000488520	PTPN13	Q12923	2485 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	8.81	□□□□□ -1
USP4-213	ENST00000488520	ZNF487	B1APH4	448 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520		B8ZZF3	427 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	PRAMEF26	H0Y7S4	382 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520		I6L893	689 aa	Predicted RBP	8.81	□□□□□ -1
USP4-213	ENST00000488520	MSTN	O14793	375 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	SLC28A2	O43868	658 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	OPA1	O60313	960 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	CST8	O60676	142 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	RNGTT	O60942	597 aa	Known RBP	8.81	□□□□□ -1
USP4-213	ENST00000488520	CD48	P09326	243 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	PYGM	P11217	842 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	PEX5	P50542	639 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	PLK1	P53350	603 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	CLDN2	P57739	230 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	DYNLT1	P63172	113 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	OVGP1	Q12889	678 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	ELAVL3	Q14576	367 aa	Known RBP	8.81	□□□□□ -1
USP4-213	ENST00000488520	PCSK7	Q16549	785 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	MANEAL	Q5VSG8	457 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	AGBL4	Q5VU57	503 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	CDCP2	Q5VXM1	449 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	MFSD7	Q6UXD7	560 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	IQCH	Q86VS3	1027 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	TRIM69	Q86WT6	500 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	CPNE8	Q86YQ8	564 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	ZNF683	Q8IZ20	524 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	UMODL1-AS1	Q8N2C9	162 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	SLC35F6	Q8N357	371 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	ATP11C	Q8NB49	1132 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	OR4C6	Q8NH72	309 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	FAM71B	Q8TC56	605 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	FRS2	Q8WU20	508 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	ARHGEF2	Q92974	986 aa	Known RBP	8.81	□□□□□ -1
USP4-213	ENST00000488520	HAUS1	Q96CS2	278 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	HIC2	Q96JB3	615 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	APOLD1	Q96LR9	279 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	CCDC114	Q96M63	670 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	NAP1L3	Q99457	506 aa	Predicted RBP	8.81	□□□□□ -1
USP4-213	ENST00000488520	OSBPL8	Q9BZF1	889 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	ABCG4	Q9H172	646 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	CLMP	Q9H6B4	373 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	SP110	Q9HB58	689 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	KCND1	Q9NSA2	647 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	TPX2	Q9ULW0	747 aa	Known RBP	8.81	□□□□□ -1
USP4-213	ENST00000488520	SATB2	Q9UPW6	733 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	EFR3B	Q9Y2G0	817 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	HEY1	Q9Y5J3	304 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520	SPTA1	P02549	2419 aa		8.81	□□□□□ -1
USP4-213	ENST00000488520		A0A1W2PQU0	124 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	USP27X	A6NNY8	438 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	RASA4B	C9J798	803 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	C1QTNF3-AMACR	E9PGA6	284 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	KIF2A	O00139	706 aa	Predicted RBP	8.8	□□□□□ -1
USP4-213	ENST00000488520	PPP1R12A	O14974	1030 aa	Predicted RBP	8.8	□□□□□ -1
USP4-213	ENST00000488520	DDX3Y	O15523	660 aa	Known RBP	8.8	□□□□□ -1
USP4-213	ENST00000488520	SLC7A4	O43246	635 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	RASA4	O43374	803 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	KDELR3	O43731	214 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	CEP104	O60308	925 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	PIAS2	O75928	621 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	SASH3	O75995	380 aa		8.8	□□□□□ -1

Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms